Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12f02
         (792 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0451 - 22361617-22361811,22362728-22362842,22363443-223635...    54   2e-07
03_02_0701 - 10523053-10523220,10523802-10523916,10524102-105241...    50   2e-06
05_03_0676 - 16853937-16854042,16854605-16854700,16854920-168550...    29   5.6  
07_01_0595 - 4432642-4432926,4433062-4433769,4433964-4434164,443...    28   9.8  
02_04_0632 + 24614659-24615528,24615636-24616133                       28   9.8  

>01_05_0451 -
           22361617-22361811,22362728-22362842,22363443-22363513,
           22363600-22363754,22363843-22363933,22364049-22364104,
           22364910-22365027,22365087-22365200,22365289-22365504
          Length = 376

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 21/46 (45%), Positives = 33/46 (71%)
 Frame = +3

Query: 198 QF*IMPQLLNFLDVGVELNSIDWGVLAIYTCKASCNKGSAYMLEYM 335
           +F IMPQLL++  V  E +S+DW  + +YTCK SC++  +YM E++
Sbjct: 310 EFQIMPQLLHYFHVENEPDSLDWATIIVYTCKGSCDQNVSYMEEFV 355


>03_02_0701 -
           10523053-10523220,10523802-10523916,10524102-10524172,
           10524263-10524420,10524497-10524590,10524678-10524766,
           10525322-10525419,10525492-10525625,10525714-10525797,
           10525903-10526151
          Length = 419

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 20/45 (44%), Positives = 30/45 (66%)
 Frame = +3

Query: 198 QF*IMPQLLNFLDVGVELNSIDWGVLAIYTCKASCNKGSAYMLEY 332
           +F IMPQLL +  V  E +S+DW  + +YTCK SC++  +Y  E+
Sbjct: 362 EFQIMPQLLYYFGVKNEPDSLDWATIVVYTCKGSCDQNVSYKEEF 406


>05_03_0676 -
           16853937-16854042,16854605-16854700,16854920-16855089,
           16856742-16856825,16857042-16857119,16858053-16858216,
           16858345-16858429
          Length = 260

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 656 HTCIKSLRMGYTVCCCRYWFPLLWHLETFW 567
           +TCI S+ +G  V  C+YW  +   L++FW
Sbjct: 110 NTCIISVDIGIFVVLCKYW--VAAKLDSFW 137


>07_01_0595 -
           4432642-4432926,4433062-4433769,4433964-4434164,
           4434296-4435288
          Length = 728

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 387 IKNDFYIYFSFTDFFPYSSDTYVKKSFKPL 476
           +  D YI FSF+ F+P+   T V     PL
Sbjct: 279 VSRDEYIGFSFSPFYPFVPGTTVHLRMNPL 308


>02_04_0632 + 24614659-24615528,24615636-24616133
          Length = 455

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -2

Query: 620 VCCCRYWFPLLWHLET 573
           +CCC  +FP++W + +
Sbjct: 337 ICCCAVFFPIIWSIRS 352


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,284,679
Number of Sequences: 37544
Number of extensions: 322141
Number of successful extensions: 675
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)