Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12f02
         (792 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   4.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   7.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   7.5  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 320 VCRSFVTTSFASINS*YSPVYA-VQFYTNI 234
           VC++F    +A++ S Y P++  +Q Y  I
Sbjct: 196 VCQNFFYQIYATLGSFYIPLFVMIQVYYKI 225


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 652 LALRALGWGTLYAVAGTGFLCYGI 581
           LA+  + W + +A+A     C GI
Sbjct: 504 LAINHIRWNSAFAIAPAVISCLGI 527


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 652 LALRALGWGTLYAVAGTGFLCYGI 581
           LA+  + W + +A+A     C GI
Sbjct: 594 LAINHIRWNSAFAIAPAVISCLGI 617


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,953
Number of Sequences: 438
Number of extensions: 4469
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)