Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12e24
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0798 + 24701885-24702874                                         29   2.6  
12_01_1019 - 10398880-10399314,10399401-10399481,10399560-103996...    28   7.8  
12_01_0788 + 7192937-7192994,7193074-7193160,7193242-7193307,719...    28   7.8  

>06_03_0798 + 24701885-24702874
          Length = 329

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +2

Query: 428 YWKPGSLCSRKS--SVFPGVPLERRPDGVPGHFDVIHR 535
           YW  GS   +    +  PG P   RPDG  G++  +HR
Sbjct: 247 YWIQGSKAGKSEPFAELPGYPDNVRPDGKGGYWVALHR 284


>12_01_1019 -
           10398880-10399314,10399401-10399481,10399560-10399652,
           10399784-10399999,10403837-10403935,10404244-10404867,
           10404946-10405033,10405167-10405430,10406437-10406504
          Length = 655

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -1

Query: 325 FRLGRYESLSLNNDVFAF---KRWYNDDTYIIVMNV 227
           + L R + + ++ND  +    KRWY DD Y++   V
Sbjct: 235 YDLERNKPVIIDNDFVSINISKRWYTDDNYVLASQV 270


>12_01_0788 +
           7192937-7192994,7193074-7193160,7193242-7193307,
           7193447-7193555,7194522-7194785,7194919-7195006,
           7195085-7195708,7196017-7196140,7196195-7196337,
           7196434-7196649,7196781-7196873,7196952-7197032,
           7197120-7197504,7197599-7197636
          Length = 791

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -1

Query: 325 FRLGRYESLSLNNDVFAF---KRWYNDDTYIIVMNV 227
           + L R + + ++ND  +    KRWY DD Y++   V
Sbjct: 319 YDLERNKPVIIDNDFVSINISKRWYTDDNYVLASQV 354


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,880,796
Number of Sequences: 37544
Number of extensions: 379863
Number of successful extensions: 970
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)