Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12e24
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93375-4|CAB07562.2|  647|Caenorhabditis elegans Hypothetical pr...    34   0.11 
Z92822-4|CAD18893.2|  791|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z82266-11|CAB05177.4| 1192|Caenorhabditis elegans Hypothetical p...    29   4.0  
Z68752-6|CAD27607.1|  322|Caenorhabditis elegans Hypothetical pr...    29   4.0  
DQ360810-1|ABC88647.1| 1192|Caenorhabditis elegans intraflagella...    29   4.0  
AY038065-1|AAK72094.1|  322|Caenorhabditis elegans beta 1,3-gala...    29   4.0  
Z81035-10|CAB02733.2|  405|Caenorhabditis elegans Hypothetical p...    27   9.2  

>Z93375-4|CAB07562.2|  647|Caenorhabditis elegans Hypothetical
           protein C38C6.2 protein.
          Length = 647

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 32/110 (29%), Positives = 49/110 (44%)
 Frame = -1

Query: 661 LNMLILLLPGIAITYMGEEIGMVNGFVPWSETKDPLACNTDDPVNYIEVSRDPVRTPFQW 482
           L +L ++LPG    Y GEEIGM N           LA ++  P         P +   QW
Sbjct: 456 LMVLQMILPGTNNIYYGEEIGMRN-----------LANDSRVP---------PQKGAMQW 495

Query: 481 NSGKNGGFSTAERTWLPVADGYESLNVASQRSAVRSHYQVYRTLTNLRIR 332
           +   NGGF++A    +P      ++N   Q +  +S  +++  L  LR R
Sbjct: 496 DDSLNGGFTSAISPPVPSNIDVANINWKRQYAEPQSTLKIFAKLAKLRQR 545


>Z92822-4|CAD18893.2|  791|Caenorhabditis elegans Hypothetical
           protein ZK520.4c protein.
          Length = 791

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
 Frame = +1

Query: 67  ASLKLKLRRPPNPNGLLERCRCRSLKTKRCWPQL--LIVQIQDRKP-SN*QFDHAF 225
           +S K+ LRRPP P  ++   + + ++  + W QL   I+ I + +P +N Q+ H F
Sbjct: 3   SSTKVSLRRPPRPQ-VMYSLKPKVVEFDKVWVQLRPSIIDIINLRPITNVQWHHKF 57


>Z82266-11|CAB05177.4| 1192|Caenorhabditis elegans Hypothetical
            protein F23B2.4 protein.
          Length = 1192

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 403  VASQRSAVRSHYQVYRTLTNLRIRPAFRL-GRYESLSLN 290
            +A++  A +S       LTNLR+ P F L G+ E ++LN
Sbjct: 963  IANEMGAYKSARTALDQLTNLRVLPQFELDGQIEVMTLN 1001


>Z68752-6|CAD27607.1|  322|Caenorhabditis elegans Hypothetical
           protein T12G3.8 protein.
          Length = 322

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -1

Query: 391 RSAVRSHYQVYRTLTNLRIRPAFRLGRYESLSLNNDVFAFKRWYND 254
           R +VR  + V+R +  + + P F +GR E++ +   +      Y D
Sbjct: 93  RESVRKTWGVFRMIDGVEVMPIFIVGRVENMEIMRRIDVESEKYKD 138


>DQ360810-1|ABC88647.1| 1192|Caenorhabditis elegans intraflagellar
            transport protein protein.
          Length = 1192

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 403  VASQRSAVRSHYQVYRTLTNLRIRPAFRL-GRYESLSLN 290
            +A++  A +S       LTNLR+ P F L G+ E ++LN
Sbjct: 963  IANEMGAYKSARTALDQLTNLRVLPQFELDGQIEVMTLN 1001


>AY038065-1|AAK72094.1|  322|Caenorhabditis elegans beta
           1,3-galactosyltransferaseBRE-5 protein.
          Length = 322

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -1

Query: 391 RSAVRSHYQVYRTLTNLRIRPAFRLGRYESLSLNNDVFAFKRWYND 254
           R +VR  + V+R +  + + P F +GR E++ +   +      Y D
Sbjct: 93  RESVRKTWGVFRMIDGVEVMPIFIVGRVENMEIMRRIDVESEKYKD 138


>Z81035-10|CAB02733.2|  405|Caenorhabditis elegans Hypothetical
           protein C15H11.6 protein.
          Length = 405

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +2

Query: 233 HNDYIR--IVVVPSFESKHIVVQ*QRFISPKSKRRPD 337
           H++Y     +V P  E K  +V  Q FIS  SKRR D
Sbjct: 355 HDNYFTRTFMVAPRGEGKVAIVSDQLFISSMSKRRGD 391


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,207,400
Number of Sequences: 27780
Number of extensions: 334802
Number of successful extensions: 1045
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)