Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12e24
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...   136   1e-34
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.   131   7e-33
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...   131   7e-33
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    97   1e-22
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.0  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score =  136 bits (330), Expect = 1e-34
 Identities = 66/157 (42%), Positives = 94/157 (59%)
 Frame = -1

Query: 667 DALNMLILLLPGIAITYMGEEIGMVNGFVPWSETKDPLACNTDDPVNYIEVSRDPVRTPF 488
           D + ML L LPGI + Y G+EIGM + +  + ET DP  CN   P  Y   SRDP RTP+
Sbjct: 368 DEIVMLTLTLPGIGVVYNGDEIGMEDRWFTYQETVDPAGCNAG-PAKYYLKSRDPERTPY 426

Query: 487 QWNSGKNGGFSTAERTWLPVADGYESLNVASQRSAVRSHYQVYRTLTNLRIRPAFRLGRY 308
           QW++  + GFS   +TWLPV + Y+SLN+A+Q+    SHY  +++L+ L+ +P    G  
Sbjct: 427 QWDNSTSAGFSQTNKTWLPVNENYKSLNLAAQKREYYSHYVAFKSLSYLKKQPVIANGSL 486

Query: 307 ESLSLNNDVFAFKRWYNDDTYIIVMNVGKRDRIVNLT 197
           E   ++  V + KR   +DT I++MN  K    VNLT
Sbjct: 487 EVDVIDGRVLSVKRELGNDTVIVMMNFSKNPVTVNLT 523


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score =  131 bits (316), Expect = 7e-33
 Identities = 63/184 (34%), Positives = 111/184 (60%), Gaps = 2/184 (1%)
 Frame = -1

Query: 661 LNMLILLLPGIAITYMGEEIGMVNGFVPWSETKDPLACNTDDPVNYIEVSRDPVRTPFQW 482
           +  + LLLPG+A+ Y G+EIGM + ++ W +T+DP  C      NY  +SRDP RTPFQW
Sbjct: 364 ITTMSLLLPGVAVNYYGDEIGMSDTYISWEDTQDPQGCGAGKE-NYQTMSRDPARTPFQW 422

Query: 481 NSGKNGGFSTAERTWLPVADGYESLNVASQRSAVRSHYQVYRTLTNLRIRPAFRLGRYES 302
           +   + GFS++  TWL V + Y+++N+A+++    S + +++   +L+  P F+     +
Sbjct: 423 DDSVSAGFSSSSNTWLRVNENYKTVNLAAEKKDKNSFFNMFKKFASLKKSPYFKEANLNT 482

Query: 301 LSLNNDVFAFKRWYNDD-TYIIVMNVGKRDRIVNLTAFDLVFGQLEVEASSVLSS-RTYS 128
             LN++VFAF R   D+ +   ++N    ++IV+L AF+ V  +L +  ++  S  ++ S
Sbjct: 483 RMLNDNVFAFSRETEDNGSLYAILNFSNEEQIVDLKAFNNVPKKLNMFYNNFNSDIKSIS 542

Query: 127 DNVQ 116
           +N Q
Sbjct: 543 NNEQ 546


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score =  131 bits (316), Expect = 7e-33
 Identities = 63/184 (34%), Positives = 111/184 (60%), Gaps = 2/184 (1%)
 Frame = -1

Query: 661 LNMLILLLPGIAITYMGEEIGMVNGFVPWSETKDPLACNTDDPVNYIEVSRDPVRTPFQW 482
           +  + LLLPG+A+ Y G+EIGM + ++ W +T+DP  C      NY  +SRDP RTPFQW
Sbjct: 364 ITTMSLLLPGVAVNYYGDEIGMSDTYISWEDTQDPQGCGAGKE-NYQTMSRDPARTPFQW 422

Query: 481 NSGKNGGFSTAERTWLPVADGYESLNVASQRSAVRSHYQVYRTLTNLRIRPAFRLGRYES 302
           +   + GFS++  TWL V + Y+++N+A+++    S + +++   +L+  P F+     +
Sbjct: 423 DDSVSAGFSSSSNTWLRVNENYKTVNLAAEKKDKNSFFNMFKKFASLKKSPYFKEANLNT 482

Query: 301 LSLNNDVFAFKRWYNDD-TYIIVMNVGKRDRIVNLTAFDLVFGQLEVEASSVLSS-RTYS 128
             LN++VFAF R   D+ +   ++N    ++IV+L AF+ V  +L +  ++  S  ++ S
Sbjct: 483 RMLNDNVFAFSRETEDNGSLYAILNFSNEEQIVDLKAFNNVPKKLNMFYNNFNSDIKSIS 542

Query: 127 DNVQ 116
           +N Q
Sbjct: 543 NNEQ 546


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 97.5 bits (232), Expect = 1e-22
 Identities = 65/204 (31%), Positives = 101/204 (49%), Gaps = 6/204 (2%)
 Frame = -1

Query: 667 DALNMLILLLPGIAITYMGEEIGMVNGFVPWSETKDPLACNTDDPVNYIEVSRDPVRTPF 488
           D + ML ++LPG+A+TY GEEIGMV                 D+   Y    RD  RTPF
Sbjct: 374 DHMIMLEMILPGVAVTYYGEEIGMV-----------------DNTTIYKYDVRDGCRTPF 416

Query: 487 QWNSGKNGGFS-----TAERTWLPVADGYES-LNVASQRSAVRSHYQVYRTLTNLRIRPA 326
           QW++  N GFS       E+ WLPV   Y+S LN+  ++    SHY +Y  LT LR R  
Sbjct: 417 QWDNSINAGFSKIAENLLEKNWLPVHTSYKSGLNLEQEKKDSISHYHLYTNLTALRKRDV 476

Query: 325 FRLGRYESLSLNNDVFAFKRWYNDDTYIIVMNVGKRDRIVNLTAFDLVFGQLEVEASSVL 146
            + G +    LN  V A  R   ++   +++N  K + IV+++         ++  SSV 
Sbjct: 477 LKKGNFTIEILNKTVLAVVRQSEEEAVSLLINFSKNNTIVDISKLVNKRNNAKIYTSSVN 536

Query: 145 SSRTYSDNVQANRLDLAVDEALVL 74
           S+ T +  V    +++  D ++++
Sbjct: 537 SNLTVNQTVNPVAINIPGDTSIIV 560


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 349 SAFCKLDNAI*QPIFDWPRLTIHSRQLLEA 438
           S FC ++  I   + +WPRL    ++L  A
Sbjct: 391 SQFCTVEGFITAAVDEWPRLLRKRKELFIA 420


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 349 SAFCKLDNAI*QPIFDWPRLTIHSRQLLEA 438
           S FC ++  I   + +WPRL    ++L  A
Sbjct: 444 SQFCTVEGFITAAVDEWPRLLRKRKELFIA 473


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,296
Number of Sequences: 438
Number of extensions: 4335
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)