Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12e22
(707 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0017 + 18937774-18937864,18938505-18940945 260 6e-70
04_01_0103 + 1082077-1082167,1083037-1085477 258 3e-69
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 232 2e-61
01_06_0662 + 30987187-30987277,30987825-30990214 231 4e-61
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 187 7e-48
03_05_0511 + 25056018-25059107 113 1e-25
02_04_0148 - 20198407-20201424 100 1e-21
04_04_0640 - 26891552-26891725,26891814-26892326,26892698-268936... 53 2e-07
03_05_0044 + 20203644-20204054,20204695-20204916,20205092-202051... 50 2e-06
02_02_0474 + 10738476-10738797,10739568-10739677,10739891-107400... 38 0.010
11_06_0768 + 27129007-27129038,27129140-27129220,27129723-271300... 37 0.018
01_04_0109 + 16112581-16112934 32 0.39
04_01_0330 - 4369326-4370852 30 2.1
09_06_0142 - 21107878-21109104 28 6.3
07_03_0698 - 20765305-20768526 28 8.4
>02_04_0017 + 18937774-18937864,18938505-18940945
Length = 843
Score = 260 bits (638), Expect = 6e-70
Identities = 116/173 (67%), Positives = 142/173 (82%)
Frame = -2
Query: 673 KLRDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACL 494
+++DSVVAGFQWA+KEG +AEEN+RG+ F + DV LH DAIHRGGGQ+IPT RR +YA
Sbjct: 659 EIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQ 718
Query: 493 LTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNES 314
LTA+PRL+EPVYL EIQ PE A+GGIYGVLN++RGHVFEE Q GTP++ +KAYLPV ES
Sbjct: 719 LTAKPRLLEPVYLVEIQAPENALGGIYGVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIES 778
Query: 313 FGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKE 155
FGF++ LR+ T GQAFPQCVFDHW ++ DP E S+ +VQ+ RKRKGLKE
Sbjct: 779 FGFSSQLRAATSGQAFPQCVFDHWDMMTSDPLEAGSQASTLVQDIRKRKGLKE 831
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = -1
Query: 707 VDCSKGVQYLNEIK 666
VD KGVQYLNEIK
Sbjct: 648 VDMCKGVQYLNEIK 661
>04_01_0103 + 1082077-1082167,1083037-1085477
Length = 843
Score = 258 bits (632), Expect = 3e-69
Identities = 115/173 (66%), Positives = 141/173 (81%)
Frame = -2
Query: 673 KLRDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACL 494
+++DSVVAGFQWA+KEG +AEEN+RG+ F + DV LH DAIHRGGGQ+IPT RR +YA
Sbjct: 659 EIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQ 718
Query: 493 LTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNES 314
LTA+PRL+EPVYL EIQ PE A+GGIYGVLN++RGHVFEE Q GTP++ +KAYLPV ES
Sbjct: 719 LTAKPRLLEPVYLVEIQAPENALGGIYGVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIES 778
Query: 313 FGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKE 155
FGF++ LR+ T GQAFPQCVFDHW ++ DP E S+ +V + RKRKGLKE
Sbjct: 779 FGFSSQLRAATSGQAFPQCVFDHWDMMTSDPLEVSSQANQLVLDIRKRKGLKE 831
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = -1
Query: 707 VDCSKGVQYLNEIK 666
VD KGVQYLNEIK
Sbjct: 648 VDMCKGVQYLNEIK 661
>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
Length = 853
Score = 232 bits (568), Expect = 2e-61
Identities = 103/173 (59%), Positives = 132/173 (76%)
Frame = -2
Query: 673 KLRDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACL 494
+++DSVVAGFQWA+KEG +AEEN+RGV F + DVTLH+D+IHRGGGQ+IPT RR +YA
Sbjct: 669 EIKDSVVAGFQWASKEGALAEENMRGVCFELCDVTLHSDSIHRGGGQLIPTARRAMYAAQ 728
Query: 493 LTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNES 314
LTA PRLMEP+Y +IQ P+ AVG +YGVLN R G + EES+ GTP+ ++ YLPV +S
Sbjct: 729 LTASPRLMEPMYQVDIQVPKTAVGNVYGVLNSRNGELVEESERTGTPLSNLRFYLPVAKS 788
Query: 313 FGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKE 155
F FT LR+ T GQAFPQC+F HWQ + DP + S+ V+ + RKRKGLK+
Sbjct: 789 FDFTEKLRAETSGQAFPQCIFHHWQTMRSDPFQEGSEAAKVITDIRKRKGLKD 841
>01_06_0662 + 30987187-30987277,30987825-30990214
Length = 826
Score = 231 bits (565), Expect = 4e-61
Identities = 106/159 (66%), Positives = 130/159 (81%), Gaps = 2/159 (1%)
Frame = -2
Query: 673 KLRDSVVAGFQWAAKEGVMAEENLRG--VRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYA 500
+++DSVVAGFQWA+KEG +AEEN+RG + F + DV LH+DAIHRGGGQIIPT RR +YA
Sbjct: 655 EIKDSVVAGFQWASKEGALAEENMRGRGICFEVCDVILHSDAIHRGGGQIIPTARRVIYA 714
Query: 499 CLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVN 320
LTA+PRL+EPVYL EIQ PE A+GGIY VLN++RGHVFEE Q GTP++ +KAYLPV
Sbjct: 715 AQLTAKPRLLEPVYLVEIQAPENALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVI 774
Query: 319 ESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSK 203
ESFGFT+ LR+ T GQAFP VFDHW++L DP EP ++
Sbjct: 775 ESFGFTSTLRAATSGQAFPLFVFDHWEMLSVDPLEPGTR 813
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = -1
Query: 707 VDCSKGVQYLNEIK 666
VD KGVQYLNEIK
Sbjct: 644 VDMCKGVQYLNEIK 657
>06_03_0715 - 23823427-23823525,23823616-23823822,23823907-23824017,
23824124-23824322,23824410-23824495,23824940-23825098,
23825204-23825302,23825385-23826578,23826666-23826734,
23828042-23828812
Length = 997
Score = 187 bits (456), Expect = 7e-48
Identities = 93/184 (50%), Positives = 120/184 (65%), Gaps = 12/184 (6%)
Frame = -2
Query: 670 LRDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLL 491
++DS+V GFQW A+EG + +E +R V+F I + + + +HRGGGQIIPT RR +Y+ L
Sbjct: 786 VKDSIVQGFQWGAREGPLCDEPIRNVKFKILNANIAPEPLHRGGGQIIPTARRVVYSAFL 845
Query: 490 TAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESF 311
A PRLMEPVY EIQ P V IY VL+RRRGHV + GTP+++VKA+LPV ESF
Sbjct: 846 MANPRLMEPVYYIEIQTPIDCVSAIYTVLSRRRGHVTADVPKPGTPIYVVKAFLPVIESF 905
Query: 310 GFTADLRSNTGGQAFPQCVFDHWQVLPGD---------PCEP---QSKPYNVVQETRKRK 167
GF DLR +T GQAF VFDHW ++PGD P EP Q + +TR+RK
Sbjct: 906 GFETDLRYHTQGQAFCLSVFDHWAIVPGDPLDKNIVLRPLEPAPIQHLAREFMVKTRRRK 965
Query: 166 GLKE 155
G+ E
Sbjct: 966 GMSE 969
>03_05_0511 + 25056018-25059107
Length = 1029
Score = 113 bits (272), Expect = 1e-25
Identities = 60/161 (37%), Positives = 88/161 (54%), Gaps = 8/161 (4%)
Frame = -2
Query: 679 SMKLRDSVVAGFQWAAKEGVMAEENLRGVRFNI--YDVTLHTDAIHRG------GGQIIP 524
S+ LR+ +V+GFQ A G + +E + G+ F + Y H+DA + GQ+I
Sbjct: 812 SVALRNCIVSGFQLATNAGPLCDEPMWGLVFVVEPYIFCDHSDAANHSEQYNIFSGQVIT 871
Query: 523 TTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFI 344
+ ++ +PRL+E +Y CE+ P +G Y VL+R+R V +E GT +F
Sbjct: 872 AVKEACREAVVQNKPRLVEAMYFCELTTPTEQLGATYAVLSRKRARVLKEEMQEGTSLFT 931
Query: 343 VKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 221
V AYLPV ES GF+ +LRS T G A V HW+ +P DP
Sbjct: 932 VHAYLPVAESVGFSNELRSVTAGAASALLVLSHWEAIPEDP 972
>02_04_0148 - 20198407-20201424
Length = 1005
Score = 100 bits (239), Expect = 1e-21
Identities = 56/159 (35%), Positives = 78/159 (49%), Gaps = 9/159 (5%)
Frame = -2
Query: 670 LRDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTL---------HTDAIHRGGGQIIPTT 518
+++S+ GFQ A G + E G+ F + L +D GQII
Sbjct: 790 VKNSIATGFQLATNAGPLCGEPTWGLIFLVKPYILPDSADASNNQSDHYSTFSGQIITAV 849
Query: 517 RRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVK 338
R A +L ++PRL+EP+Y CE+ P +G +Y VL R V +E GT +F V
Sbjct: 850 REACQAAILESKPRLVEPMYFCELTTPTEQLGSMYAVLGNCRARVLKEEMQEGTSLFTVH 909
Query: 337 AYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 221
AYL V ES F+ LR+ T G A F HW+ +P DP
Sbjct: 910 AYLSVAESSEFSKKLRNATAGAASALLAFSHWETVPQDP 948
>04_04_0640 - 26891552-26891725,26891814-26892326,26892698-26893644,
26893778-26894114,26894413-26894462,26895020-26895248
Length = 749
Score = 53.2 bits (122), Expect = 2e-07
Identities = 42/143 (29%), Positives = 65/143 (45%)
Frame = -2
Query: 658 VVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQP 479
V+ G + + GV+A + +R + D + H QI R L A P
Sbjct: 592 VMKGIEESLPNGVLAGYPVVDLRAVLVDGSYHDVDSSVLAFQI--AARGAFREGLRKAGP 649
Query: 478 RLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTA 299
RL+EP+ E+ PE +G + G LN RRG V G + +V A++P+ E F + +
Sbjct: 650 RLLEPIMKVEVITPEEHLGDVIGDLNSRRGQVNSFGDKPG-GLKVVDAFVPLAEMFQYVS 708
Query: 298 DLRSNTGGQAFPQCVFDHWQVLP 230
LR T G+A + V+P
Sbjct: 709 TLRGMTKGRASYTMQLAKFDVVP 731
>03_05_0044 +
20203644-20204054,20204695-20204916,20205092-20205130,
20206275-20206396,20206489-20206639,20207892-20207963,
20208256-20208351,20208861-20208949,20209068-20209134,
20210197-20210235,20210369-20210429,20210572-20210681,
20210766-20210840,20210914-20210982,20213126-20213247,
20214682-20214807,20214897-20215017,20215133-20215233,
20215564-20215624,20216560-20216613,20217585-20217689
Length = 770
Score = 49.6 bits (113), Expect = 2e-06
Identities = 32/130 (24%), Positives = 58/130 (44%)
Frame = -2
Query: 661 SVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQ 482
++ GF+ A G + + +R + D H A+ + C A+
Sbjct: 613 AIEKGFKEACNSGSLIGHPVENIRIVLTDGASH--AVDSSELAFKLASIYAFRQCYAAAR 670
Query: 481 PRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFT 302
P ++EPV E++ P G + G +N+R+G + Q +V ++P+N FG++
Sbjct: 671 PVILEPVMKVELKVPTEFQGTVTGDMNKRKGIIVGNDQEGDDT--VVVCHVPLNNMFGYS 728
Query: 301 ADLRSNTGGQ 272
LRS T G+
Sbjct: 729 TALRSMTQGK 738
>02_02_0474 +
10738476-10738797,10739568-10739677,10739891-10740094,
10740400-10740576,10740659-10740811,10741535-10741624,
10741939-10742049,10742169-10742285,10742881-10743032,
10743116-10743200,10743597-10743691,10744211-10744376,
10744459-10744654,10745662-10745795
Length = 703
Score = 37.5 bits (83), Expect = 0.010
Identities = 20/89 (22%), Positives = 38/89 (42%)
Frame = -2
Query: 490 TAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESF 311
T +L EP + ++ PE +G + +L +RRG + + ++K +P
Sbjct: 497 TVDGKLQEPYEIAAVEVPEEYMGSVVELLGKRRGQMVDMQPSGPEGTTLLKYKIPTRGLI 556
Query: 310 GFTADLRSNTGGQAFPQCVFDHWQVLPGD 224
G + + + G A +FD + GD
Sbjct: 557 GLRNAVLTASRGTAILNTIFDSYGPWAGD 585
>11_06_0768 +
27129007-27129038,27129140-27129220,27129723-27130089,
27130165-27130255,27130515-27130595,27130764-27131830,
27132060-27132071,27132465-27133209,27133210-27135244,
27135712-27135787,27135925-27136029,27137080-27137166
Length = 1592
Score = 36.7 bits (81), Expect = 0.018
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = -3
Query: 318 SRSVLLPICVPTPADRPSRSAYSTIGRSSLETRANLRASPTTLYRKRERGKD 163
S S +P +P P D PS+ +T G S+ +N SP+ +Y K G D
Sbjct: 19 STSARVPGVIPKPIDLPSQRGTATQGDKSMPPASNAWGSPSVMYPKNGGGSD 70
>01_04_0109 + 16112581-16112934
Length = 117
Score = 32.3 bits (70), Expect = 0.39
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = -3
Query: 321 MSRSVLLP--ICVPTPADRPSRSAYSTIGRSSLETRANLRASPTTLYRKRERGK 166
M+ VL P + +P+PA R R+ +T R++ +++ R PTT +R +G+
Sbjct: 1 MATEVLRPHNVLLPSPAQRRIRATAATHQRTANNHQSDARTKPTTAGSRRRQGR 54
>04_01_0330 - 4369326-4370852
Length = 508
Score = 29.9 bits (64), Expect = 2.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 522 VGMIWPPPLWMASVWSVTS 578
+G IWPPP+W S TS
Sbjct: 487 IGKIWPPPVWFKRCTSATS 505
>09_06_0142 - 21107878-21109104
Length = 408
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 197 VGLALRFARVSREDLPMVEYALREGLS-AGVGTQIGSKTER 316
V L L++ E LP++ A REG++ AGV +GS R
Sbjct: 171 VDLGLKYGANPDEVLPLLRAAQREGVAVAGVSFHVGSGASR 211
>07_03_0698 - 20765305-20768526
Length = 1073
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = -2
Query: 604 LRGVRFNIYDVTLHTDAIHRG----GGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQ 443
L G + ++ D+ L D +HRG ++ P +L P+L+E +++C I+
Sbjct: 870 LSGTKASLIDLFLQVDKLHRGLLSLSIRMDPPGNWDAIDAILLRPPKLLESLHICSIR 927
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,619,386
Number of Sequences: 37544
Number of extensions: 473089
Number of successful extensions: 1291
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1288
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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