Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12e22
(707 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 323 7e-89
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 323 7e-89
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 180 9e-46
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 180 9e-46
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 77 9e-15
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 47 2e-05
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 42 4e-04
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 30 1.4
AF016661-4|AAB66050.2| 567|Caenorhabditis elegans Hypothetical ... 29 4.3
Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z46794-3|CAA86783.1| 429|Caenorhabditis elegans Hypothetical pr... 28 5.7
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical protein
F25H5.4 protein.
Length = 852
Score = 323 bits (794), Expect = 7e-89
Identities = 143/176 (81%), Positives = 161/176 (91%)
Frame = -2
Query: 673 KLRDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACL 494
+++DSVVAGFQWA +EGV+++EN+RGVRFN++DVTLH DAIHRGGGQIIPT RR YA +
Sbjct: 668 EIKDSVVAGFQWATREGVLSDENMRGVRFNVHDVTLHADAIHRGGGQIIPTARRVFYASV 727
Query: 493 LTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNES 314
LTA+PRL+EPVYL EIQCPE AVGGIYGVLNRRRGHVFEESQV GTPMF+VKAYLPVNES
Sbjct: 728 LTAEPRLLEPVYLVEIQCPEAAVGGIYGVLNRRRGHVFEESQVTGTPMFVVKAYLPVNES 787
Query: 313 FGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLP 146
FGFTADLRSNTGGQAFPQCVFDHWQVLPGDP E +KP +V +TRKRKGLKEG+P
Sbjct: 788 FGFTADLRSNTGGQAFPQCVFDHWQVLPGDPLEAGTKPNQIVLDTRKRKGLKEGVP 843
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = -1
Query: 707 VDCSKGVQYLNEIK 666
+D +KGVQYLNEIK
Sbjct: 657 MDVTKGVQYLNEIK 670
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 323 bits (794), Expect = 7e-89
Identities = 143/176 (81%), Positives = 161/176 (91%)
Frame = -2
Query: 673 KLRDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACL 494
+++DSVVAGFQWA +EGV+++EN+RGVRFN++DVTLH DAIHRGGGQIIPT RR YA +
Sbjct: 668 EIKDSVVAGFQWATREGVLSDENMRGVRFNVHDVTLHADAIHRGGGQIIPTARRVFYASV 727
Query: 493 LTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNES 314
LTA+PRL+EPVYL EIQCPE AVGGIYGVLNRRRGHVFEESQV GTPMF+VKAYLPVNES
Sbjct: 728 LTAEPRLLEPVYLVEIQCPEAAVGGIYGVLNRRRGHVFEESQVTGTPMFVVKAYLPVNES 787
Query: 313 FGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLP 146
FGFTADLRSNTGGQAFPQCVFDHWQVLPGDP E +KP +V +TRKRKGLKEG+P
Sbjct: 788 FGFTADLRSNTGGQAFPQCVFDHWQVLPGDPLEAGTKPNQIVLDTRKRKGLKEGVP 843
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = -1
Query: 707 VDCSKGVQYLNEIK 666
+D +KGVQYLNEIK
Sbjct: 657 MDVTKGVQYLNEIK 670
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 180 bits (438), Expect = 9e-46
Identities = 85/184 (46%), Positives = 118/184 (64%), Gaps = 12/184 (6%)
Frame = -2
Query: 670 LRDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLL 491
+R+S+V GFQWA +EG + EE +R V+F + D + T+ ++RGGGQ+IPT RRC Y+ L
Sbjct: 766 VRESLVQGFQWATREGPLCEEPIRQVKFKLLDAAIATEPLYRGGGQMIPTARRCAYSAFL 825
Query: 490 TAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESF 311
A PRLMEP Y E+ P V +Y VL +RRGHV ++ + G+PM+ + AY+PV +SF
Sbjct: 826 MATPRLMEPYYTVEVVAPADCVAAVYTVLAKRRGHVTTDAPMPGSPMYTISAYIPVMDSF 885
Query: 310 GFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEP---------QSKPY---NVVQETRKRK 167
GF DLR +T GQAF F HWQ++PGDP + Q P+ + +TR+RK
Sbjct: 886 GFETDLRIHTQGQAFCMSAFHHWQLVPGDPLDKSIVIKTLDVQPTPHLAREFMIKTRRRK 945
Query: 166 GLKE 155
GL E
Sbjct: 946 GLSE 949
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 180 bits (438), Expect = 9e-46
Identities = 85/184 (46%), Positives = 118/184 (64%), Gaps = 12/184 (6%)
Frame = -2
Query: 670 LRDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLL 491
+R+S+V GFQWA +EG + EE +R V+F + D + T+ ++RGGGQ+IPT RRC Y+ L
Sbjct: 641 VRESLVQGFQWATREGPLCEEPIRQVKFKLLDAAIATEPLYRGGGQMIPTARRCAYSAFL 700
Query: 490 TAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESF 311
A PRLMEP Y E+ P V +Y VL +RRGHV ++ + G+PM+ + AY+PV +SF
Sbjct: 701 MATPRLMEPYYTVEVVAPADCVAAVYTVLAKRRGHVTTDAPMPGSPMYTISAYIPVMDSF 760
Query: 310 GFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEP---------QSKPY---NVVQETRKRK 167
GF DLR +T GQAF F HWQ++PGDP + Q P+ + +TR+RK
Sbjct: 761 GFETDLRIHTQGQAFCMSAFHHWQLVPGDPLDKSIVIKTLDVQPTPHLAREFMIKTRRRK 820
Query: 166 GLKE 155
GL E
Sbjct: 821 GLSE 824
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical protein
K10C3.5a protein.
Length = 894
Score = 77.4 bits (182), Expect = 9e-15
Identities = 47/149 (31%), Positives = 72/149 (48%), Gaps = 2/149 (1%)
Frame = -2
Query: 661 SVVAGFQWAAKEGVMAEENLRGVRFNI--YDVTLHTDAIHRGGGQIIPTTRRCLYACLLT 488
++VAGF+ G + E + G+ + ++V AI GGQ++ + A
Sbjct: 693 ALVAGFELFCNTGPLCNEIMHGIAVIVEEWNVDEEDGAI---GGQMMTAIKASCSAAAKK 749
Query: 487 AQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFG 308
RL+ +Y C + A+G ++ VL++R+ V E T +F V + +PV ESF
Sbjct: 750 LALRLVAAMYRCTVTTASQALGKVHAVLSQRKSKVLSEDINEATNLFEVVSLMPVVESFS 809
Query: 307 FTADLRSNTGGQAFPQCVFDHWQVLPGDP 221
F LR T G A Q F HWQV+ DP
Sbjct: 810 FCDQLRKFTSGMASAQLQFSHWQVIDEDP 838
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/55 (43%), Positives = 28/55 (50%)
Frame = -2
Query: 385 VFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 221
V E T +F V + +PV ESF F LR T G A Q F HWQV+ DP
Sbjct: 595 VLSEDINEATNLFEVVSLMPVVESFSFCDQLRKFTSGMASAQLQFSHWQVIDEDP 649
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 41.9 bits (94), Expect = 4e-04
Identities = 31/126 (24%), Positives = 53/126 (42%)
Frame = -2
Query: 649 GFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLM 470
G EG + + + G+ I D + H A+ +I T + + A L+
Sbjct: 586 GLDAIVAEGPLIKSRIAGIHVRIQDGSTH--AVDSTEIAMINTMQNMMRESFEKANWLLL 643
Query: 469 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLR 290
EP+ E P G + L +R + G I +A P+++ FG+T++LR
Sbjct: 644 EPIMKVEATVPTEFQGNVVTSLTQRNALITTTDSTEGYATVICEA--PLSDMFGYTSELR 701
Query: 289 SNTGGQ 272
S T G+
Sbjct: 702 SLTEGK 707
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 30.3 bits (65), Expect = 1.4
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Frame = -2
Query: 541 GGQIIPT-----TRRCLYACLLTAQPRLMEPVYLCEIQCP-EVAVGGIYGVLNRRRGHVF 380
GG+I P ++C+ L + + L EPV +I+ + I L RRR H
Sbjct: 565 GGKINPALLSACAQKCVSEALSSGEMVLTEPVMEVQIEIRNDDPTQPILNELLRRRAHFE 624
Query: 379 EESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGG 275
T + + A LP++E+ + +R+ T G
Sbjct: 625 HSDATESTEIRRICAILPLSETENLSKTVRTLTSG 659
>AF016661-4|AAB66050.2| 567|Caenorhabditis elegans Hypothetical
protein F02E11.1 protein.
Length = 567
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 230 REDLPMVEYALREGLSAGVGTQIGSKTERLID 325
+ED+ +EY + E ++ +GTQ+ KT +D
Sbjct: 232 QEDVTRIEYLIHEYQNSDIGTQMLKKTRTAVD 263
>Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical protein
F22E10.2 protein.
Length = 1324
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -2
Query: 541 GGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRR 395
G Q + T RCL A +L + +M + + + A G ++ ++NR+
Sbjct: 1017 GDQTVDKTFRCLMAMMLCCEGIIMSAQFFPQFVGAKSAAGQMFNLINRQ 1065
>Z46794-3|CAA86783.1| 429|Caenorhabditis elegans Hypothetical
protein R06F6.4 protein.
Length = 429
Score = 28.3 bits (60), Expect = 5.7
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Frame = -2
Query: 706 WIAPKE-FSTSMKLRDSVVAGFQWAAKEGVMAE--ENLRGVRFNIYDVTLHTDAIHRGGG 536
W K+ F ++ +A A + + E NL +++ TLH +HR
Sbjct: 275 WTMSKDHFELCRTAEEAGIAARSRLANDAIPLETKRNLCEKLLDLFQDTLHDHNVHR--- 331
Query: 535 QIIPTTRRCLYACLLTAQ 482
IP R CLY C L AQ
Sbjct: 332 --IPVLR-CLYICSLAAQ 346
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,160,191
Number of Sequences: 27780
Number of extensions: 387297
Number of successful extensions: 1033
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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