Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12e21
         (395 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    28   0.60 
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    24   9.8  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    24   9.8  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   9.8  

>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.9 bits (59), Expect = 0.60
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -1

Query: 179 SMQNTLSVIN-IFHHLHDLRIPTLLTDSLLVNPS 81
           S+Q+ L+ +  + HHL    I TLL+ SL  +PS
Sbjct: 120 SLQDRLTTLRTLLHHLPSQEISTLLSSSLTSSPS 153


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 300 THVVLMRTNKKKDNNTVSIIL 238
           +HV L++TN K D + ++ +L
Sbjct: 37  SHVYLVQTNSKTDGSPITAVL 57


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 230 KELK*KHMYSYLSVT*YSMQNTLSVINIFH-HLHDLR 123
           K  + KH Y YL+V  + + + LS   IF  +LH  R
Sbjct: 58  KRRRKKHRYIYLAVCLFFLASVLSCAIIFRFYLHTNR 94


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -2

Query: 253 C*YYFGKAKNLNE 215
           C YY  K KNLNE
Sbjct: 476 CIYYINKKKNLNE 488


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,406,339
Number of Sequences: 5004
Number of extensions: 23691
Number of successful extensions: 42
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)