Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12e21
         (395 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1089 - 8935945-8936043,8936722-8936949,8937033-8937086,894...    27   4.1  
06_02_0098 + 11720417-11720806,11722151-11722348,11723088-117232...    26   9.6  

>06_01_1089 -
          8935945-8936043,8936722-8936949,8937033-8937086,
          8940200-8940276,8940453-8940554,8941138-8941261
          Length = 227

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 4  FLLMVGIFFDFYEVLLVAQRFCK 72
          F   V +FFD YE+++V  R  K
Sbjct: 31 FSATVNLFFDIYEIIMVVSRLVK 53


>06_02_0098 +
           11720417-11720806,11722151-11722348,11723088-11723210,
           11723288-11723499,11723580-11723851,11723931-11724199,
           11724976-11724990
          Length = 492

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 51  GGPKVLQVSPGRVDE 95
           GGP  LQ+SPGR  E
Sbjct: 112 GGPGALQISPGRFSE 126


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,202,298
Number of Sequences: 37544
Number of extensions: 126625
Number of successful extensions: 164
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)