Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12e20
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyce...    25   9.0  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    25   9.0  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   9.0  

>SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -2

Query: 337 YALVHK-AV*IQVDYTIFGMWTI 272
           Y LVHK A  IQ  Y ++G W+I
Sbjct: 105 YTLVHKKARDIQARYGVYGTWSI 127


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
 Frame = +3

Query: 3   FFESNKP*IMTRFQ----W*YPCHNFIVLVH 83
           FF+S    ++T FQ    + YPC  F+VLVH
Sbjct: 390 FFQSLSWALITGFQSPLPYFYPCFFFVVLVH 420


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 249 IWNTRGHSTLLGRDFARPMTRTRQAIANSK 160
           IW+  GH  L+  D +R  +  RQA+ + K
Sbjct: 404 IWSALGHCYLMQDDLSRAYSAYRQALYHLK 433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,023,862
Number of Sequences: 5004
Number of extensions: 60787
Number of successful extensions: 128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)