Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12e20
         (767 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily ass...    30   1.6  
Z75529-2|CAA99783.1|  755|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AL132862-5|CAB70227.1|  419|Caenorhabditis elegans Hypothetical ...    29   4.8  
AL132862-4|CAB60533.1|  420|Caenorhabditis elegans Hypothetical ...    29   4.8  
AF192264-1|AAF18435.1|  321|Caenorhabditis elegans CHORD contain...    28   8.4  
AC006708-3|AAF60417.1|  321|Caenorhabditis elegans Chord protein...    28   8.4  

>U97017-1|AAB52363.1| 2643|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 162 protein.
          Length = 2643

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 245  HIAVDGRVENSPHTKNSVINLNSNRFVN*SIISTDRYFSLTRF 373
            H+ +    ENSP  +   + ++S R  N S  S+D + + TRF
Sbjct: 2279 HLCITTPSENSPTVRKECLCVHSTRLDNGSCGSSDSFIAFTRF 2321


>Z75529-2|CAA99783.1|  755|Caenorhabditis elegans Hypothetical
           protein C44H9.2 protein.
          Length = 755

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 467 LKWNRRGLEANWNL-QESSRLGERVADLVKHYYV*W 571
           +K+ R   E NWNL  +SSR    +  L+KHY+V W
Sbjct: 558 IKFLRYVSEPNWNLLPDSSRTVIDMPVLMKHYFVGW 593


>AL132862-5|CAB70227.1|  419|Caenorhabditis elegans Hypothetical
           protein Y73F8A.9 protein.
          Length = 419

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +1

Query: 181 TCPCHGSCEVSAQECTMSSSVPYCSRWSCRK*STYQK*CNQLEFKPLCE 327
           T PC  +C+ +A +C +    P C + S  +    Q  C Q  + P+C+
Sbjct: 229 TQPCQTTCQQAAPQC-VQQCAPQCQQPSAPQCQQCQNTCQQ--YAPVCQ 274


>AL132862-4|CAB60533.1|  420|Caenorhabditis elegans Hypothetical
           protein Y73F8A.8 protein.
          Length = 420

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +1

Query: 181 TCPCHGSCEVSAQECTMSSSVPYCSRWSCRK*STYQK*CNQLEFKPLCE 327
           T PC  +C+ +A +C +    P C + S  +    Q  C Q  + P+C+
Sbjct: 230 TQPCQTTCQQAAPQC-VQQCAPQCQQPSAPQCQQCQNTCQQ--YAPVCQ 275


>AF192264-1|AAF18435.1|  321|Caenorhabditis elegans CHORD containing
           protein protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 434 FGSWMFGKGCHRTQNLTKKPQNELK 360
           FG+WM  KGC R ++  +KP + +K
Sbjct: 54  FGTWMNYKGCTRGKHSNEKPVDIVK 78


>AC006708-3|AAF60417.1|  321|Caenorhabditis elegans Chord protein
           protein 1 protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 434 FGSWMFGKGCHRTQNLTKKPQNELK 360
           FG+WM  KGC R ++  +KP + +K
Sbjct: 54  FGTWMNYKGCTRGKHSNEKPVDIVK 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,551,612
Number of Sequences: 27780
Number of extensions: 336943
Number of successful extensions: 762
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)