Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12e16
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3 |Sc...    30   0.24 
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc...    29   0.31 
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    29   0.55 
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    27   1.7  
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    27   2.2  

>SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 297

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -1

Query: 498 DGNMYAVFCLILISNYAFVQGEFVFKKKCRD--VDTSLCTVHNVMVEPCGEGPIFCALKK 325
           D + Y   C + +   A   GE   +   RD  V ++    H ++ +P   GP+ C L+K
Sbjct: 91  DCDQYCPKCSVELFLNAKCTGEGTMEIYARDLVVSSNSSLGHPILADPKSRGPLICKLRK 150

Query: 324 NKPYSI 307
            +  S+
Sbjct: 151 EQEISL 156


>SPBC947.08c |||histone promoter control protein Hpc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 338

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 237 QNTFSTTFTRSAEYNDLLDNTLSEGKRTHIQLQLAVDKRASG 112
           +  +  +   +++ NDL D+  SEG+ TH+  Q A +  A G
Sbjct: 32  EKLYGPSVQENSKKNDLSDSADSEGESTHVDEQQAANGAADG 73


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 28.7 bits (61), Expect = 0.55
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 140 WSCMCVRFPSDKVLSSRSLY 199
           W C C++ PSD  L  R LY
Sbjct: 331 WRCACIKKPSDSDLIERDLY 350


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 19/68 (27%), Positives = 32/68 (47%)
 Frame = -1

Query: 339 CALKKNKPYSISLDVTPHFSANKLHAVIKGDVQNQNTFSTTFTRSAEYNDLLDNTLSEGK 160
           CA KK   +  SL  +P+ +  +L +    +  ++   STT  R   +   L   +  GK
Sbjct: 237 CASKKETLHIFSLHGSPN-TIRQLTSEEPYEEASEFKSSTTEPRQTHWKRKLLKLIDSGK 295

Query: 159 RTHIQLQL 136
           R H ++QL
Sbjct: 296 RAHWRIQL 303


>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -2

Query: 218 PSRDQQSTMTYWTILYRKGSEHTYNSSWLW 129
           P+RD    M  W I Y   S H Y+  W W
Sbjct: 502 PARDLGPRMFAWWIGYGPHSFHLYHWWWTW 531


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,230,203
Number of Sequences: 5004
Number of extensions: 46975
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)