Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12e16
         (516 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            27   0.38 
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    25   2.0  
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            25   2.0  
CR954256-5|CAJ14146.1|  615|Anopheles gambiae predicted protein ...    23   6.1  
AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal ion/p...    23   6.1  
AF364132-1|AAL35508.1|  397|Anopheles gambiae putative odorant r...    23   6.1  

>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 27.1 bits (57), Expect = 0.38
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
 Frame = -3

Query: 493 KHVRRILSYFDF-----ELRFCSGRVCIQEKM 413
           +HVR  +SY DF     +L+FCS +   Q KM
Sbjct: 251 RHVRHAVSYVDFQDGASQLQFCSDKCLNQYKM 282


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 213 TRSAEYNDLLDNTLSEGKRTHIQLQLAVDKRASGKFPLE 97
           T + EY    +NTL+  +   IQ  L   KR  G+F +E
Sbjct: 291 TEAVEYLKQ-ENTLTRTRNQQIQKYLCEQKRKIGEFEVE 328


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 312 SISLDVTPHFSANKLHAVIKGDVQNQNTFS 223
           SISLD+ P    N+L  + + D+   N +S
Sbjct: 137 SISLDIAPQVFTNELSKLQRLDLSQNNMWS 166


>CR954256-5|CAJ14146.1|  615|Anopheles gambiae predicted protein
           protein.
          Length = 615

 Score = 23.0 bits (47), Expect = 6.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 255 KGDVQNQNTFSTTFTRSAEYNDLLDNTLSEGK 160
           K  +++ N  STT+TR+ E ND L   L+  K
Sbjct: 85  KSRLKSSNLKSTTYTRNTE-NDKLTRHLNTVK 115


>AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal
           ion/proton exchanger 3 protein.
          Length = 1221

 Score = 23.0 bits (47), Expect = 6.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 489 MYAVFCLILISNYAFV 442
           +Y VFC  L+S+ AFV
Sbjct: 127 IYVVFCSALLSHNAFV 142


>AF364132-1|AAL35508.1|  397|Anopheles gambiae putative odorant
           receptor Or4 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 6.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 141 GVVCVFASLPIKYCPVGHCTL 203
           G VC    + I  C +GHCTL
Sbjct: 201 GYVCNLKVMTI-CCSIGHCTL 220


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 562,715
Number of Sequences: 2352
Number of extensions: 11594
Number of successful extensions: 33
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 46937349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)