Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12e16
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54342-12|CAA91145.2|  758|Caenorhabditis elegans Hypothetical p...    28   4.6  
Z81554-1|CAB04506.1|  838|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z93375-2|CAB07564.2|  359|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z49907-3|CAA90085.1|  225|Caenorhabditis elegans Hypothetical pr...    27   8.0  
AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ...    27   8.0  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    27   8.0  
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related...    27   8.0  

>Z54342-12|CAA91145.2|  758|Caenorhabditis elegans Hypothetical
           protein C08H9.3a protein.
          Length = 758

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -2

Query: 161 SEHTYNSSWLWTNAPLANSHWKFAFGTRMIRLMFVAQYLAVKIR*VM 21
           S+  Y S   WT   L   H      TRM+ L ++ QYLAV+   VM
Sbjct: 549 SDMVYISVSFWTYPDL--KHVATISDTRMLELPYIPQYLAVREAEVM 593


>Z81554-1|CAB04506.1|  838|Caenorhabditis elegans Hypothetical
           protein F57G4.1 protein.
          Length = 838

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 492 NMYAVFCLILISN-YAFVQGEFVFKKKCRDVDTSLCT 385
           N+  +F L  + N +  V+ E  F   C DVDT+LCT
Sbjct: 460 NIEGLFELDHVENQFLTVENEVSFGFDCCDVDTNLCT 496


>Z93375-2|CAB07564.2|  359|Caenorhabditis elegans Hypothetical
           protein C38C6.4 protein.
          Length = 359

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = -1

Query: 486 YAVFCLILISNYAFVQGEFVFKKKCRDVDTSLCTVHNVMVEPCGEGPIFCALKK 325
           Y    LI I  + ++   ++  K C+   T+   +H+ +  PC  G + C ++K
Sbjct: 38  YIQIALIFIVLFYYLLNVYIDIKTCQ-FSTNTQKIHHAIYLPCVLGHVMCLIQK 90


>Z49907-3|CAA90085.1|  225|Caenorhabditis elegans Hypothetical
           protein B0491.3 protein.
          Length = 225

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -1

Query: 288 HFSANKLHAVIKGDVQNQNTFSTTFTRSAEYNDLLDNTLSEGKRTHIQLQL 136
           HF A K +AV+ G              S ++ +LLD TL++  +    L L
Sbjct: 76  HFKALKWNAVLTGQATEYMATKEKLECSKKFKELLDKTLAKEPKDTAVLHL 126


>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
            repeats, ras-likedomain, kinase protein 1 protein.
          Length = 2395

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 432  FVFKKKCRDVDTSLCTVHNVMVEPCGEGP 346
            FVF+   R  +  LC V   M+EP   GP
Sbjct: 1709 FVFRATVRQPNGELCEVAQKMLEPVDPGP 1737


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 423  KKKCRDVDTSLCTVHNVMVEPCGEGPIFC 337
            KK+C DV T+LC       +   E PI C
Sbjct: 1181 KKQCLDVSTALCDGIRDCFDGSDENPIHC 1209


>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
            kinase protein.
          Length = 2393

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 432  FVFKKKCRDVDTSLCTVHNVMVEPCGEGP 346
            FVF+   R  +  LC V   M+EP   GP
Sbjct: 1707 FVFRATVRQPNGELCEVAQKMLEPVDPGP 1735


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,359,643
Number of Sequences: 27780
Number of extensions: 268360
Number of successful extensions: 780
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)