Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12e15
         (266 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    27   0.59 
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    26   0.78 
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    26   1.0  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   3.1  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    24   3.1  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    23   5.5  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    23   7.2  
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr...    23   7.2  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    23   7.2  
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    23   9.6  

>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 0.59
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 6   FSTSIIRDSFQAIHFIRITSKPHIPLVQRTTPSIS 110
           F   + RD +    F+    KPH  LV+ + PS++
Sbjct: 80  FDFDVCRDCYAKQAFLHPCPKPHFVLVRSSIPSVA 114


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 26.2 bits (55), Expect = 0.78
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 150 YMIKTPAR*TNSSSYNEKTRKNFVPHYSKFSYPKL 254
           Y IK P   TN S    K +  F+P Y+K   P+L
Sbjct: 408 YPIKPP---TNISEIPRKLKSGFIPPYAKRVVPRL 439


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 1.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 195 NEKTRKNFVPHYSKFSYPKLHK 260
           + KTR++F PH S  S+  LH+
Sbjct: 204 DSKTRQSFPPHSSSSSHNSLHE 225


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 183 SSSYNEKTRKNFVPHYSKFSY 245
           SSSY E+TRK F  H++ F +
Sbjct: 78  SSSY-EQTRKPFFHHFNPFEF 97


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 242 REFRIMWYEILPSFFIITAAVGLPGWGLY 156
           +EF  +W  IL + FII++   +   GLY
Sbjct: 342 KEFYELWNSILQNHFIISSRNIIDSLGLY 370


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = -1

Query: 164 GLYHIHNLTLGNHYRRSLTDRWSRALYQRDMRLTGN 57
           G+++ HN T+G  + +  ++R  R+    D  + G+
Sbjct: 333 GVHNFHNFTVGQAFHQKNSNRVIRSFTASDPFMIGD 368


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +3

Query: 171  R*TNSSSYNEKTRKNFVPHYSKFSYPKLHKC 263
            R T     NEK  K  +P   +F     H+C
Sbjct: 1702 RHTKCHRRNEKNEKEIIPDTCRFGDEFTHRC 1732


>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 652

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 213 SSEFFHYNCCCW 178
           S+E  HY C CW
Sbjct: 357 SNEMAHYACDCW 368


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -3

Query: 255 VTWDTRI*NNVVRNSSEFFHYNCCCW 178
           + WD       +R+    F  +CCCW
Sbjct: 280 ILWDAFT-GEKLRDYKHGFSVSCCCW 304


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 48  FIRITSKPHIPLVQRTTPS 104
           F + T KP  PL   TTP+
Sbjct: 583 FSKTTIKPETPLTPTTTPT 601


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,110,036
Number of Sequences: 5004
Number of extensions: 18716
Number of successful extensions: 36
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)