Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12e15
(266 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0047 + 19595904-19596185,19596284-19596424,19597195-195973... 27 2.7
07_01_0024 + 159839-159923,160395-160442,160884-160895,161347-16... 27 2.7
04_04_0584 + 26381220-26381232,26381583-26381594,26381921-263820... 27 2.7
04_03_0363 - 14942195-14942203,14942421-14943417,14944178-14944278 27 2.7
01_07_0302 - 42611150-42611812,42611881-42611961,42612064-426121... 27 2.7
01_07_0167 - 41613834-41613842,41614060-41615056,41615456-416163... 27 2.7
04_03_0645 + 18351034-18353299,18353707-18354203,18354633-18354680 26 3.6
08_01_0245 + 2023442-2023786,2024485-2024841,2024951-2025393,202... 25 6.3
04_03_0643 + 18328807-18331969,18332560-18332627 25 8.3
01_03_0230 - 14004159-14004344,14004422-14004514,14004613-140046... 25 8.3
>11_06_0047 +
19595904-19596185,19596284-19596424,19597195-19597307,
19597970-19598049,19598557-19598720,19598931-19599060,
19599155-19599254,19599452-19599500,19599775-19599849,
19600026-19600124,19600745-19600823,19600897-19601045,
19601334-19601393,19601490-19601684
Length = 571
Score = 26.6 bits (56), Expect = 2.7
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 209 PSFFIITAAVGLPGWGLYHIHNLTLGNHYRRS 114
P+F ITAAVG+ WG + +L YR S
Sbjct: 305 PNFSRITAAVGIWSWGAISLAFASLVMFYRVS 336
>07_01_0024 +
159839-159923,160395-160442,160884-160895,161347-161427,
161530-161675,161918-161965,162054-162203,165647-165706,
165788-165859,165960-166409,166640-166839,167239-168236,
168676-168683,169057-169230,169341-169659,169748-169824,
169897-169966,170040-170111,170204-170418,170540-170665,
170751-171046,171133-171157,171163-171303,171400-171498,
171571-171702,171793-171912
Length = 1407
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +3
Query: 201 KTRKNFVPHYSKFSY-PKLH 257
+TRKNF+P YSK + P +H
Sbjct: 481 RTRKNFIPVYSKTDFCPFIH 500
>04_04_0584 +
26381220-26381232,26381583-26381594,26381921-26382028,
26382137-26382217,26382320-26382465,26382550-26382624,
26382709-26382756,26382845-26382994,26383081-26383140,
26383394-26384274,26384674-26385670,26385887-26385895
Length = 859
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +3
Query: 201 KTRKNFVPHYSKFSY-PKLH 257
+TRKNF+P YSK + P +H
Sbjct: 555 RTRKNFIPVYSKTDFCPFIH 574
>04_03_0363 - 14942195-14942203,14942421-14943417,14944178-14944278
Length = 368
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +3
Query: 201 KTRKNFVPHYSKFSY-PKLH 257
+TRKNF+P YSK + P +H
Sbjct: 64 RTRKNFIPVYSKTDFCPFIH 83
>01_07_0302 -
42611150-42611812,42611881-42611961,42612064-42612150,
42612283-42612378,42612479-42612543,42612919-42612975,
42613066-42613147,42613235-42613327,42613714-42613785,
42613881-42613985
Length = 466
Score = 26.6 bits (56), Expect = 2.7
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = -1
Query: 152 IHNLTLGNHY--RRSLTDRWSRALYQRDMRLTGNPY-EVNGL 36
I NL LGN+ RRS + S Y R++ L GNP E +GL
Sbjct: 202 ILNLDLGNNLIERRSDLEVLSELHYLRNLNLQGNPIAEKDGL 243
>01_07_0167 -
41613834-41613842,41614060-41615056,41615456-41616336,
41616437-41616508,41616590-41616649,41616736-41616885,
41616974-41617021,41617107-41617181,41617266-41617411,
41617514-41617594,41617703-41617810,41618046-41618057,
41618137-41618148,41618499-41618546,41619021-41619105
Length = 927
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/20 (55%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +3
Query: 201 KTRKNFVPHYSKFSY-PKLH 257
+TRKNF+P YSK + P +H
Sbjct: 623 RTRKNFIPVYSKTDFCPFIH 642
>04_03_0645 + 18351034-18353299,18353707-18354203,18354633-18354680
Length = 936
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -1
Query: 170 GWGLYHIHNLTLGNHYRRSLTDRWSRALYQRDMRLTGNPYEVNGLE 33
GW ++H TL N + S+ +R+ ++ +PYE+NGL+
Sbjct: 342 GWRIFH---RTLSNGLQGSMILVTTRSSKVANLVSNSDPYELNGLQ 384
>08_01_0245 +
2023442-2023786,2024485-2024841,2024951-2025393,
2025475-2025569,2026302-2026477
Length = 471
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 17 NYPG*LPSHSLHKDYQ*ASYPSGTTHDSI 103
+YPG P HS KD A Y S T +++
Sbjct: 384 DYPGVGPEHSFLKDIGRAEYDSVTDQEAL 412
>04_03_0643 + 18328807-18331969,18332560-18332627
Length = 1076
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -1
Query: 170 GWGLYHIHNLTLGNHYRRSLTDRWSRALYQRDMRLTGNPYEVNGLE 33
GW +H TL N + S+ +R+ ++ +PYE+NGL+
Sbjct: 342 GWRTFH---RTLSNGLQGSMILVTTRSSKVANLVSNSDPYELNGLQ 384
>01_03_0230 -
14004159-14004344,14004422-14004514,14004613-14004673,
14004761-14004874,14004955-14005206,14005293-14007037
Length = 816
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 246 DTRI*NNVVRNSSEFFHYNCC 184
DT I NV R+ F HY+CC
Sbjct: 767 DTCI-KNVQRDLCHFIHYDCC 786
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,657,514
Number of Sequences: 37544
Number of extensions: 108923
Number of successful extensions: 266
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 14,793,348
effective HSP length: 67
effective length of database: 12,277,900
effective search space used: 257835900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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