Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12e15
         (266 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY075548-1|AAL68355.1|   73|Drosophila melanogaster RH49308p pro...    89   1e-18
AY061306-1|AAL28854.1|  743|Drosophila melanogaster LD22256p pro...    57   4e-09
AJ635208-1|CAG25590.1| 1153|Drosophila melanogaster CAP-G protei...    57   4e-09
AE013599-1638|AAS64861.1|  743|Drosophila melanogaster CG17054-P...    57   4e-09
AE013599-1634|AAF58425.4| 1153|Drosophila melanogaster CG17054-P...    57   4e-09
X01472-2|CAA25702.1| 1058|Drosophila melanogaster protein ( Dros...    27   3.6  
AJ000387-3|CAA04050.1| 1217|Drosophila melanogaster reverse tran...    26   6.3  
BT006018-1|AAO74701.1|   76|Drosophila melanogaster GM07658p pro...    26   8.3  

>AY075548-1|AAL68355.1|   73|Drosophila melanogaster RH49308p
           protein.
          Length = 73

 Score = 88.6 bits (210), Expect = 1e-18
 Identities = 36/69 (52%), Positives = 52/69 (75%)
 Frame = -1

Query: 227 MWYEILPSFFIITAAVGLPGWGLYHIHNLTLGNHYRRSLTDRWSRALYQRDMRLTGNPYE 48
           MW+EILP   IIT  + +P + +Y +  L +GN +RR++ +R+SR +YQRD RLT NPY+
Sbjct: 1   MWFEILPGAVIITTLLSVPIYAMYGLDKLMIGNAFRRNMNERFSRVMYQRDFRLTDNPYK 60

Query: 47  VNGLEAIPD 21
           +NGL+AIPD
Sbjct: 61  MNGLDAIPD 69


>AY061306-1|AAL28854.1|  743|Drosophila melanogaster LD22256p
           protein.
          Length = 743

 Score = 56.8 bits (131), Expect = 4e-09
 Identities = 22/35 (62%), Positives = 31/35 (88%)
 Frame = -1

Query: 125 YRRSLTDRWSRALYQRDMRLTGNPYEVNGLEAIPD 21
           +RR++ +R+SR +YQRD RLT NPY++NGL+AIPD
Sbjct: 705 FRRNMDERFSRVMYQRDFRLTDNPYKMNGLDAIPD 739


>AJ635208-1|CAG25590.1| 1153|Drosophila melanogaster CAP-G protein
            protein.
          Length = 1153

 Score = 56.8 bits (131), Expect = 4e-09
 Identities = 22/35 (62%), Positives = 31/35 (88%)
 Frame = -1

Query: 125  YRRSLTDRWSRALYQRDMRLTGNPYEVNGLEAIPD 21
            +RR++ +R+SR +YQRD RLT NPY++NGL+AIPD
Sbjct: 1115 FRRNMDERFSRVMYQRDFRLTDNPYKMNGLDAIPD 1149


>AE013599-1638|AAS64861.1|  743|Drosophila melanogaster CG17054-PE,
           isoform E protein.
          Length = 743

 Score = 56.8 bits (131), Expect = 4e-09
 Identities = 22/35 (62%), Positives = 31/35 (88%)
 Frame = -1

Query: 125 YRRSLTDRWSRALYQRDMRLTGNPYEVNGLEAIPD 21
           +RR++ +R+SR +YQRD RLT NPY++NGL+AIPD
Sbjct: 705 FRRNMDERFSRVMYQRDFRLTDNPYKMNGLDAIPD 739


>AE013599-1634|AAF58425.4| 1153|Drosophila melanogaster CG17054-PA,
            isoform A protein.
          Length = 1153

 Score = 56.8 bits (131), Expect = 4e-09
 Identities = 22/35 (62%), Positives = 31/35 (88%)
 Frame = -1

Query: 125  YRRSLTDRWSRALYQRDMRLTGNPYEVNGLEAIPD 21
            +RR++ +R+SR +YQRD RLT NPY++NGL+AIPD
Sbjct: 1115 FRRNMDERFSRVMYQRDFRLTDNPYKMNGLDAIPD 1149


>X01472-2|CAA25702.1| 1058|Drosophila melanogaster protein (
           Drosophila melanogastercopia-like element 17.6. ).
          Length = 1058

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 177 TNSSSYNEKTRKNFVPHYSKFSYPKLHK 260
           TN + +   T+ N +P YSK+SYP+ ++
Sbjct: 194 TNQTKHTINTKHN-LPLYSKYSYPQAYE 220


>AJ000387-3|CAA04050.1| 1217|Drosophila melanogaster reverse
           transcriptase protein.
          Length = 1217

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 144 IMYMIKTPAR*TNSSSYNEKTRKNFVPHYSKFSYPKLHK 260
           I Y  +TP   TN  +++  T  N   H   + YP +HK
Sbjct: 291 IFYNPETPLTFTNKITHSIPTIDNTPIHTKSYRYPFVHK 329


>BT006018-1|AAO74701.1|   76|Drosophila melanogaster GM07658p
           protein.
          Length = 76

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +2

Query: 35  PSHSLHKDYQ*ASYPSGT--THDSIYQ*ASVYNDCLKSDYVYDKDPSPVDQQ 184
           P   L+  +   +Y SGT  T + + Q  ++   C K  Y++D  P+ +DQQ
Sbjct: 25  PERHLYAFFTFKNYFSGTLLTKNVLNQKDNLLGWCQKLVYLFDPVPASLDQQ 76


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,560,585
Number of Sequences: 53049
Number of extensions: 197173
Number of successful extensions: 357
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 24,988,368
effective HSP length: 67
effective length of database: 21,434,085
effective search space used: 450115785
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)