Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12e14
         (762 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5DW36 Cluster: Putative uncharacterized protein; n=1; ...    33   5.8  
UniRef50_Q6UAN9 Cluster: Class I helical cytokine receptor numbe...    33   7.7  
UniRef50_Q6YZS2 Cluster: Putative uncharacterized protein OSJNBa...    33   7.7  

>UniRef50_A5DW36 Cluster: Putative uncharacterized protein; n=1;
           Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
           uncharacterized protein - Lodderomyces elongisporus
           (Yeast) (Saccharomyces elongisporus)
          Length = 1253

 Score = 33.5 bits (73), Expect = 5.8
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
 Frame = +2

Query: 374 WKYATHSRTRIQLVPHIREFSLPLPS*CKHTSNFGGKTRNFE-VRKTQLSPLKAITCHTF 550
           WK+  +     QL+P +   S  + +  K TSN GGK+  F+ V    LS L  I   ++
Sbjct: 121 WKFDANYALMDQLLPLVLFLSGAIAN--KQTSNIGGKSLQFKLVAINTLSGLANILGQSY 178

Query: 551 SAAALWRVDFMSDPHVIQILTDVLVS 628
             A+  R+ F+SD   + +  DV+ S
Sbjct: 179 FEASGKRLHFLSDS--LSLSLDVITS 202


>UniRef50_Q6UAN9 Cluster: Class I helical cytokine receptor number
           17; n=4; Tetraodontidae|Rep: Class I helical cytokine
           receptor number 17 - Tetraodon nigroviridis (Green
           puffer)
          Length = 394

 Score = 33.1 bits (72), Expect = 7.7
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -1

Query: 762 WS-CTLKPIYEGKADYVYSQKRLLKFEPPTRKPAPSTNT 649
           WS   L+  +EG+ DYV ++  +L+ + PT +P P T+T
Sbjct: 292 WSPLQLEQPWEGQTDYVSAEPEILEQDMPTFQPKPDTST 330


>UniRef50_Q6YZS2 Cluster: Putative uncharacterized protein
           OSJNBa0012O03.47; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           OSJNBa0012O03.47 - Oryza sativa subsp. japonica (Rice)
          Length = 373

 Score = 33.1 bits (72), Expect = 7.7
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 328 PLHPHHTACNAALC*LEIRHSQPDTHSTCPSYKRILLTS 444
           PLHPHH A NAA C  +   +   T +T   Y R++  S
Sbjct: 238 PLHPHHAAFNAACCASDRSVTGRMTDATATVYPRLVSVS 276


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 733,456,831
Number of Sequences: 1657284
Number of extensions: 14365818
Number of successful extensions: 36769
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 34758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36758
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 63381147830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)