Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12e14
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c...    26   6.7  
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.7  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    26   6.7  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    25   8.9  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    25   8.9  

>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 356 TLRCADWKYATHSRTRIQLVPHIREF 433
           T++  DWK+ T+S     L  H R F
Sbjct: 62  TMKLKDWKFETYSNRCSSLTNHTRMF 87


>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 725 PITYTAKKGCSNSSRQPESPRPRQIRMPAVSQ 630
           P   TA K  S SS+QP   +PR  + P ++Q
Sbjct: 278 PAKDTASKEPSKSSQQPVRTKPRIAQSPFLAQ 309


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
 Frame = -3

Query: 730 KSRLRIQPKKAAQIRA--ANPKARALDKYECLQCLKRHKDVREYLNHMRIAHKVYPP 566
           KS L  Q     +I A  A   ++ L   +CL C            HM+ +H +Y P
Sbjct: 180 KSHLFTQEPTPEEIEAELARRSSQRLSPRDCLFCAASFSSFDTCKKHMKASHSLYIP 236


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 729 KADYVYSQKRLLKFEPPTRKP 667
           K   V S KRL+   PPT+KP
Sbjct: 444 KIQEVSSNKRLIPSTPPTKKP 464


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +3

Query: 345 HSLQRCVVLTGNTPLTA 395
           +S  RC+++TG+ PLTA
Sbjct: 699 NSSHRCMMITGDNPLTA 715


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,105,289
Number of Sequences: 5004
Number of extensions: 63404
Number of successful extensions: 182
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)