Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12e14
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1329 - 29368815-29370064,29370186-29370318                       31   1.3  
08_02_0325 - 15787791-15788168                                         30   2.3  
12_02_1286 - 27555143-27555191,27555290-27555511,27555911-275561...    29   4.0  
11_05_0079 + 18914668-18914753,18915123-18915338,18915829-189158...    29   4.0  
03_02_0144 + 5910246-5910734                                           29   4.0  
05_07_0240 + 28606345-28607316                                         29   5.3  
03_03_0032 + 13927959-13930040,13930322-13930798                       28   9.3  

>06_03_1329 - 29368815-29370064,29370186-29370318
          Length = 460

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 11/36 (30%), Positives = 24/36 (66%)
 Frame = +1

Query: 358 AALC*LEIRHSQPDTHSTCPSYKRILLTSTLLM*AH 465
           AAL   ++R ++PD H+  P++ R++ ++ ++M  H
Sbjct: 313 AALARFDVRIAEPDNHTDMPNFARLVNSADVMMGVH 348


>08_02_0325 - 15787791-15788168
          Length = 125

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +3

Query: 465 PVISVGKLEILKFVKLNCHL*KLSLVTHFRRPLYGG 572
           PV+  G++ +  FV+ +CH   L++ +H   PL+GG
Sbjct: 5   PVVPHGEVALCAFVESSCH--ALTVGSHLSLPLHGG 38


>12_02_1286 - 27555143-27555191,27555290-27555511,27555911-27556162,
            27556683-27557062,27557202-27557311,27557864-27558033,
            27558236-27558444,27558528-27558617,27559125-27559264,
            27559356-27559463,27559626-27559716,27560736-27560852,
            27561497-27561767,27561892-27562193,27562400-27562469,
            27563464-27563702,27564613-27564846,27564943-27565179,
            27565276-27565734
          Length = 1249

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 697  AQIRAANPKARALDKYECLQCLKRHKDVRE 608
            AQI    P  +ALD+YE LQ  ++ KDV E
Sbjct: 1026 AQIEHTAPNLKALDQYETLQ--RKEKDVME 1053


>11_05_0079 +
           18914668-18914753,18915123-18915338,18915829-18915895,
           18916656-18916723,18916999-18917125,18918240-18918339,
           18918405-18918433,18918678-18918730,18919246-18919732
          Length = 410

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 411 LSLI*ENSPYLYPLNVSTPVISVGKLEILKFVKLNCHL 524
           L  +  NS  ++P N ++P++ +GK+  L F+ L  HL
Sbjct: 149 LQKVTNNSQNMFPYNSNSPLLVLGKVLTLIFLNLVVHL 186


>03_02_0144 + 5910246-5910734
          Length = 162

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -2

Query: 698 CSNSSRQPESPRPRQIRMPA-VSQTTQGRP*VFESHEDRS*SLPSIKRPPKMCDK 537
           C+    Q +SP P  +  PA VS+TT G     ++ +D    +   +R P++C +
Sbjct: 48  CTLPFTQSQSPAPAPLPSPAAVSRTTPGCSSSEDNRDDEMSDIVKQRRRPRVCTR 102


>05_07_0240 + 28606345-28607316
          Length = 323

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -2

Query: 725 PITYTAKKGCSNSSRQPESPRPRQIRMPAVSQTTQGRP 612
           P    A    S S + P S  P Q + P ++ T  GRP
Sbjct: 30  PAAAAASSRSSRSKKPPHSSDPNQSKKPRLTLTVPGRP 67


>03_03_0032 + 13927959-13930040,13930322-13930798
          Length = 852

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 515 LSPLKAITCHTFSAAALWRVDFMSDPH 595
           L  L A TC   S   LWR DF  +P+
Sbjct: 244 LQVLSAFTCVALSVMRLWRHDFGDEPN 270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,599,559
Number of Sequences: 37544
Number of extensions: 395781
Number of successful extensions: 884
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)