Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12e14
         (762 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071372-1|AAL48994.1|  392|Drosophila melanogaster RE40275p pro...    31   1.7  
AE014297-3833|AAF56491.1|  392|Drosophila melanogaster CG4730-PA...    31   1.7  
AY061122-1|AAL28670.1|  409|Drosophila melanogaster LD10434p pro...    30   4.0  
AE014298-2625|AAF48775.1|  409|Drosophila melanogaster CG6769-PA...    30   4.0  
AY061495-1|AAL29043.1|  592|Drosophila melanogaster LD45751p pro...    29   5.2  
AL021728-6|CAA16814.1|  591|Drosophila melanogaster EG:95B7.6 pr...    29   5.2  
AF170448-1|AAD50986.1|  591|Drosophila melanogaster zeste-white ...    29   5.2  
AE014298-457|AAF45819.2|  592|Drosophila melanogaster CG2711-PA ...    29   5.2  

>AY071372-1|AAL48994.1|  392|Drosophila melanogaster RE40275p
           protein.
          Length = 392

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 3/98 (3%)
 Frame = +2

Query: 260 RQS-YHTDTDNKMFNSTHFIPIHNRYIHITQLATLRCADWKYATHSRTRI-QLVPHI-RE 430
           RQS  H DT  K+F     + IH RY +     +    D ++A  S   + Q V H    
Sbjct: 234 RQSGVHCDTCGKVFAIAKALEIHKRYHNRDFPYSCDLCDRRFAQRSHLTVHQQVKHSGSR 293

Query: 431 FSLPLPS*CKHTSNFGGKTRNFEVRKTQLSPLKAITCH 544
           F    P  C+ +       RN E   T + P +   CH
Sbjct: 294 FICEFPG-CQKSFTSSSSLRNHECTHTAM-PFECAHCH 329


>AE014297-3833|AAF56491.1|  392|Drosophila melanogaster CG4730-PA
           protein.
          Length = 392

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 3/98 (3%)
 Frame = +2

Query: 260 RQS-YHTDTDNKMFNSTHFIPIHNRYIHITQLATLRCADWKYATHSRTRI-QLVPHI-RE 430
           RQS  H DT  K+F     + IH RY +     +    D ++A  S   + Q V H    
Sbjct: 234 RQSGVHCDTCGKVFAIAKALEIHKRYHNRDFPYSCDLCDRRFAQRSHLTVHQQVKHSGSR 293

Query: 431 FSLPLPS*CKHTSNFGGKTRNFEVRKTQLSPLKAITCH 544
           F    P  C+ +       RN E   T + P +   CH
Sbjct: 294 FICEFPG-CQKSFTSSSSLRNHECTHTAM-PFECAHCH 329


>AY061122-1|AAL28670.1|  409|Drosophila melanogaster LD10434p
           protein.
          Length = 409

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 661 LDKYECLQCLKRHKDVREYLNHMRIAHKVYPP 566
           L + +CL C    +D+ E L HM +AH  + P
Sbjct: 186 LTERDCLFCTHASEDLVENLKHMSVAHSFFIP 217


>AE014298-2625|AAF48775.1|  409|Drosophila melanogaster CG6769-PA
           protein.
          Length = 409

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 661 LDKYECLQCLKRHKDVREYLNHMRIAHKVYPP 566
           L + +CL C    +D+ E L HM +AH  + P
Sbjct: 186 LTERDCLFCTHASEDLVENLKHMSVAHSFFIP 217


>AY061495-1|AAL29043.1|  592|Drosophila melanogaster LD45751p
           protein.
          Length = 592

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 655 KYECLQCLKRHKDVREYLNHMRIAHKVYP 569
           +YEC +C KR K +R Y  HM     V P
Sbjct: 332 QYECEECGKRLKHLRNYKEHMLTHTNVKP 360


>AL021728-6|CAA16814.1|  591|Drosophila melanogaster EG:95B7.6
           protein.
          Length = 591

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 655 KYECLQCLKRHKDVREYLNHMRIAHKVYP 569
           +YEC +C KR K +R Y  HM     V P
Sbjct: 331 QYECEECGKRLKHLRNYKEHMLTHTNVKP 359


>AF170448-1|AAD50986.1|  591|Drosophila melanogaster zeste-white 5
           protein.
          Length = 591

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 655 KYECLQCLKRHKDVREYLNHMRIAHKVYP 569
           +YEC +C KR K +R Y  HM     V P
Sbjct: 331 QYECEECGKRLKHLRNYKEHMLTHTNVKP 359


>AE014298-457|AAF45819.2|  592|Drosophila melanogaster CG2711-PA
           protein.
          Length = 592

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 655 KYECLQCLKRHKDVREYLNHMRIAHKVYP 569
           +YEC +C KR K +R Y  HM     V P
Sbjct: 332 QYECEECGKRLKHLRNYKEHMLTHTNVKP 360


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,302,265
Number of Sequences: 53049
Number of extensions: 693708
Number of successful extensions: 2602
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2602
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3499501170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)