Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12e14
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098997-14|AAK71402.1|  321|Caenorhabditis elegans Serpentine r...    30   2.1  
Z66496-5|CAA91280.2|  507|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AC024817-4|AAP13740.1|   74|Caenorhabditis elegans Hypothetical ...    29   4.8  
AC024817-3|AAK68524.1|  482|Caenorhabditis elegans Hypothetical ...    29   4.8  
AF067619-5|AAC17565.2|  317|Caenorhabditis elegans Hypothetical ...    28   6.3  

>AF098997-14|AAK71402.1|  321|Caenorhabditis elegans Serpentine
           receptor, class i protein32 protein.
          Length = 321

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 509 FYELQNFEFSHRNYWCAYIKRVEV 438
           F ELQNF   H N WC Y+  V +
Sbjct: 176 FEELQNFAIFHFNSWCYYLVVVTI 199


>Z66496-5|CAA91280.2|  507|Caenorhabditis elegans Hypothetical
           protein E04D5.3 protein.
          Length = 507

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 701 GCSNSSRQPESPRPRQIRMPAVSQTTQGRP*VFESHE 591
           GCSN+  QP+ P  + +  PA   T    P  ++SHE
Sbjct: 272 GCSNT--QPQCPTSQYVVEPAQKTTETAEPYPYDSHE 306


>AC024817-4|AAP13740.1|   74|Caenorhabditis elegans Hypothetical
           protein Y54G2A.11b protein.
          Length = 74

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -2

Query: 746 SRFT-REKPITYTAKKGCSNSSRQPESPRPRQIRMPAVS 633
           S+FT R K I Y     C   S QP SP+P   R P+ S
Sbjct: 17  SKFTPRRKHIAYKTPLPCKVQSYQPSSPKP--TRKPSTS 53


>AC024817-3|AAK68524.1|  482|Caenorhabditis elegans Hypothetical
           protein Y54G2A.11a protein.
          Length = 482

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -2

Query: 746 SRFT-REKPITYTAKKGCSNSSRQPESPRPRQIRMPAVS 633
           S+FT R K I Y     C   S QP SP+P   R P+ S
Sbjct: 425 SKFTPRRKHIAYKTPLPCKVQSYQPSSPKP--TRKPSTS 461


>AF067619-5|AAC17565.2|  317|Caenorhabditis elegans Hypothetical
           protein K03E5.1 protein.
          Length = 317

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +2

Query: 356 TLRCADWKYATHSRTRIQLVPHIREFSLPLPS*CKH--TSNFGGKTRNFEVRK 508
           TL C  W+ A  +  RI    +++EF+L  P+ C H     + G T N  +R+
Sbjct: 226 TLDCV-WRLAVPNNFRIAF--YVKEFALTAPNQCAHNFVEVYSGDTSNKPLRR 275


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,156,601
Number of Sequences: 27780
Number of extensions: 353150
Number of successful extensions: 987
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)