Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12e13
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    30   0.38 
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    26   4.6  
SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit C...    26   6.1  
SPBC2D10.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.1  
SPBC2A9.02 |||NAD dependent epimerase/dehydratase family protein...    25   8.1  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    25   8.1  

>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1313

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
 Frame = -2

Query: 324  SWCTNKRLWRRNN*EK----TYPCQSCSI*KRWSE---TYENEI 214
            S C N+RLWRRN  EK    T P    S   RW++   T+ N I
Sbjct: 948  SICYNQRLWRRNRNEKLIYRTRPLAEYSTNGRWNQQLMTFNNTI 991


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = -3

Query: 620 QTKFRTNTRYFSSEKESGLTKSKSKESASHVSTDV 516
           + K+ ++ RY SS K+SG+ ++   +      T++
Sbjct: 22  RNKYHSHVRYLSSAKKSGILRNSYNQRTERYFTNI 56


>SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit Csn3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 334

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 333 YSRILFALLKSF*VNAVRTVT*EQFSKNVKENHT 434
           Y   L A LK   VN +RTV  E +S+ +K+N T
Sbjct: 192 YEEFLDAYLKD--VNTLRTVIKEHWSRFLKDNST 223


>SPBC2D10.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 135

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 176 LDMKQNDYGNY-MCRYLLVQLDDYSGKTFIIEDNRAEL 66
           +DM+     N+ MC Y++ ++ DY   + I   NR+ L
Sbjct: 80  IDMQDGKRFNHRMCFYVVEEMKDYMRLSIIFTKNRSNL 117


>SPBC2A9.02 |||NAD dependent epimerase/dehydratase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 380 SIYSEALEKCKQDPRVEDALGAPIKG 303
           SIY EA   CK D RV +A+G  ++G
Sbjct: 78  SIYQEA---CKLDARVIEAIGEVLRG 100


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 504 RKNQRNYKNCFLHRRNTSRCRS 439
           RK    +KN FL R+N+S+ +S
Sbjct: 37  RKGLSKFKNSFLSRKNSSQIKS 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,507,414
Number of Sequences: 5004
Number of extensions: 46844
Number of successful extensions: 177
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)