Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12e13
(712 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0394 - 8081172-8081330,8082015-8082134,8082223-8082271,808... 58 7e-09
01_01_0474 - 3488739-3488876,3488996-3489118,3489878-3489991,349... 35 0.055
08_02_0010 - 11230407-11232416 31 0.68
08_02_0009 + 11216532-11218687,11220727-11225998 31 0.68
08_02_0006 + 11204835-11206382 31 0.68
08_02_0003 + 11180421-11180757,11180773-11185715 31 0.68
08_02_0002 + 11173365-11173512,11173528-11178470 31 0.68
11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,952... 30 2.1
10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301 30 2.1
08_01_1086 - 11150017-11151564 30 2.1
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396 28 6.4
02_02_0537 + 11308195-11309667 28 6.4
01_05_0645 - 23899579-23904483 28 6.4
>03_02_0394 -
8081172-8081330,8082015-8082134,8082223-8082271,
8083193-8083371,8083583-8083852,8084480-8084631,
8085694-8085715,8086314-8086430
Length = 355
Score = 58.0 bits (134), Expect = 7e-09
Identities = 32/105 (30%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Frame = -3
Query: 422 FYVFRELFSSNSPNSIYSEALEKCKQDPRVEDALGAPIKGYG-EEXXXXXXTHVSHAVY- 249
+ VF+EL I+ +AL + + D +V +G P+ GYG E + + V+
Sbjct: 235 YAVFKELIFEPKEYKIFGKALARVQNDSQVTAKIGYPVTGYGNESRNRAARQRIPNKVWT 294
Query: 248 EKDGVKHMRMRFYIKGIRNKGVVELDM-KQNDYGNYMCRYLLVQL 117
++DGV+H+ + FYI+G G V +M K N+ ++ YL+V++
Sbjct: 295 DEDGVEHVEVNFYIRGPHGAGKVYSEMFKDNNDRSWKFTYLIVEI 339
>01_01_0474 -
3488739-3488876,3488996-3489118,3489878-3489991,
3490416-3490452,3490584-3490675,3490878-3490956,
3491640-3491734,3491858-3491991,3492560-3492833,
3493743-3494015,3494976-3495512
Length = 631
Score = 35.1 bits (77), Expect = 0.055
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 4/116 (3%)
Frame = -3
Query: 410 RELFSSNSPNSIYSEALEKCKQDPRVEDALGAPIKGYGEEXXXXXXTHVSHAVYE-KDGV 234
R F+ N P+ +Y A+ K + + +GAP+ G ++ + G
Sbjct: 184 RSRFTIN-PDKVYRIAMTKLNTSAAILEVMGAPLAGTDVRAYVMSGGGPKLKDFKFRLGG 242
Query: 233 KHMRMRFYIKGIRNKGVVELDMKQNDYGNYMCRYLLVQLDDYSG---KTFIIEDNR 75
K + F IKG KG+V +++K+ G Y + L V + SG + F++ D +
Sbjct: 243 KRCFLIFPIKGSERKGLVSVEVKKKK-GQYDMKLLAVDIPMASGPDQRLFLVGDEQ 297
>08_02_0010 - 11230407-11232416
Length = 669
Score = 31.5 bits (68), Expect = 0.68
Identities = 20/52 (38%), Positives = 25/52 (48%)
Frame = +3
Query: 87 NYKCFSTVVIKLYQQISAHIVSIIILFHIKFNNTFISYPFNIESHSHMFHSI 242
N K FS ++ ISA S ++ FHI NN S+P N S S H I
Sbjct: 274 NTKVFSDKIL-----ISADPASSMVAFHININNLLQSFPHNKPSSSTKRHDI 320
>08_02_0009 + 11216532-11218687,11220727-11225998
Length = 2475
Score = 31.5 bits (68), Expect = 0.68
Identities = 20/52 (38%), Positives = 25/52 (48%)
Frame = +3
Query: 87 NYKCFSTVVIKLYQQISAHIVSIIILFHIKFNNTFISYPFNIESHSHMFHSI 242
N K FS ++ ISA S ++ FHI NN S+P N S S H I
Sbjct: 2080 NTKVFSDKIL-----ISADPASSMVAFHININNLLQSFPHNKPSSSTKRHDI 2126
>08_02_0006 + 11204835-11206382
Length = 515
Score = 31.5 bits (68), Expect = 0.68
Identities = 20/52 (38%), Positives = 25/52 (48%)
Frame = +3
Query: 87 NYKCFSTVVIKLYQQISAHIVSIIILFHIKFNNTFISYPFNIESHSHMFHSI 242
N K FS ++ ISA S ++ FHI NN S+P N S S H I
Sbjct: 120 NTKVFSDKIL-----ISADPASSMVAFHININNLLQSFPHNKPSSSTKRHDI 166
>08_02_0003 + 11180421-11180757,11180773-11185715
Length = 1759
Score = 31.5 bits (68), Expect = 0.68
Identities = 20/52 (38%), Positives = 25/52 (48%)
Frame = +3
Query: 87 NYKCFSTVVIKLYQQISAHIVSIIILFHIKFNNTFISYPFNIESHSHMFHSI 242
N K FS ++ ISA S ++ FHI NN S+P N S S H I
Sbjct: 1364 NTKVFSDKIL-----ISADPASSMVAFHININNLLQSFPHNKPSSSTKRHDI 1410
>08_02_0002 + 11173365-11173512,11173528-11178470
Length = 1696
Score = 31.5 bits (68), Expect = 0.68
Identities = 20/52 (38%), Positives = 25/52 (48%)
Frame = +3
Query: 87 NYKCFSTVVIKLYQQISAHIVSIIILFHIKFNNTFISYPFNIESHSHMFHSI 242
N K FS ++ ISA S ++ FHI NN S+P N S S H I
Sbjct: 1301 NTKVFSDKIL-----ISADPASSMVAFHININNLLQSFPHNKPSSSTKRHDI 1347
>11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,
9527440-9527767
Length = 1505
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = +3
Query: 87 NYKCFSTVVIKLYQQISAHIVSIIILFHIKFNNTFISYPFNIESHSHMFH 236
N K FS ++ ISA S ++ FHI NN S+P N S S H
Sbjct: 1110 NTKVFSDKIL-----ISADPASSMVAFHININNLLQSFPHNKPSSSTKRH 1154
>10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301
Length = 1116
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = +3
Query: 87 NYKCFSTVVIKLYQQISAHIVSIIILFHIKFNNTFISYPFNIESHSHMFH 236
N K FS ++ ISA S ++ FHI NN S+P N S S H
Sbjct: 721 NTKVFSDKIL-----ISADPASSMVAFHININNLLQSFPHNKPSSSTKRH 765
>08_01_1086 - 11150017-11151564
Length = 515
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = +3
Query: 87 NYKCFSTVVIKLYQQISAHIVSIIILFHIKFNNTFISYPFNIESHSHMFH 236
N K FS ++ ISA S ++ FHI NN S+P N S S H
Sbjct: 120 NTKVFSDKIL-----ISADPASSMVAFHININNLLQSFPHNKPSSSTKRH 164
>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
Length = 1357
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +3
Query: 87 NYKCFSTVVIKLYQQISAHIVSIIILFHIKFNNTFISYPFNIESHSHMFH 236
N K FS ++ IS S ++ FHI NN S+P N S S H
Sbjct: 962 NTKVFSDKIL-----ISTDPASSMVAFHININNLLQSFPHNKPSSSTKRH 1006
>02_02_0537 + 11308195-11309667
Length = 490
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +3
Query: 87 NYKCFSTVVIKLYQQISAHIVSIIILFHIKFNNTFISYPFNIESHSHMFH 236
N K FS ++ IS S ++ FHI NN S+P N S S H
Sbjct: 120 NTKVFSDKIL-----ISTDPASSMVAFHININNLLQSFPHNKPSSSTKRH 164
>01_05_0645 - 23899579-23904483
Length = 1634
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +3
Query: 87 NYKCFSTVVIKLYQQISAHIVSIIILFHIKFNNTFISYPFNIESHSHMFH 236
N K FS ++ IS S ++ FHI NN S+P N S S H
Sbjct: 1239 NTKVFSDKIL-----ISTDPASSMVAFHININNLLQSFPHNKPSSSTKRH 1283
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,685,392
Number of Sequences: 37544
Number of extensions: 254094
Number of successful extensions: 619
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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