Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12e13
         (712 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC000892-1|AAH00892.1|  248|Homo sapiens C18orf55 protein protein.    119   9e-27

>BC000892-1|AAH00892.1|  248|Homo sapiens C18orf55 protein protein.
          Length = 248

 Score =  119 bits (287), Expect = 9e-27
 Identities = 66/175 (37%), Positives = 94/175 (53%), Gaps = 3/175 (1%)
 Frame = -3

Query: 578 KESGLTKSKSKESASHVSTDVRPLGEKIKETTKTVSYXXXXXXXXXXXXXIFFYVFRELF 399
           KE G +K  S   +    T V P  +K+KE  +  +Y             +F+ +F+ELF
Sbjct: 76  KEDG-SKQVSVHRSQRGGTAV-PTSQKVKEAGRDFTYLIVVLFGISITGGLFYTIFKELF 133

Query: 398 SSNSPNSIYSEALEKCKQDPRVEDALGAPIKGYGEEXXXXXXTHVSHAVYEKDGVKHMRM 219
           SS+SP+ IY  ALEKC+  P V    G  +KGYGE        HV    Y KDG+KH  +
Sbjct: 134 SSSSPSKIYGRALEKCRSHPEVIGVFGESVKGYGEVTRRGRRQHVRFTEYVKDGLKHTCV 193

Query: 218 RFYIKGIR--NKGVVELDMKQN-DYGNYMCRYLLVQLDDYSGKTFIIEDNRAELD 63
           +FYI+G     +G V   +K+N   G Y  RY+ V+++ Y  +T IIEDNR++ D
Sbjct: 194 KFYIEGSEPGKQGTVYAQVKENPGSGEYDFRYIFVEIESYPRRTIIIEDNRSQDD 248


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,076,237
Number of Sequences: 237096
Number of extensions: 1555853
Number of successful extensions: 3374
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3373
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8287202872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)