Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12e13
(712 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF045646-13|AAK29831.1| 213|Caenorhabditis elegans Hypothetical... 96 3e-20
Z48334-3|CAA88310.1| 471|Caenorhabditis elegans Hypothetical pr... 31 1.1
AF022980-11|AAG24189.1| 330|Caenorhabditis elegans Serpentine r... 30 1.9
Z83233-7|CAB05764.2| 340|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p... 29 4.3
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z69302-10|CAA93267.1| 295|Caenorhabditis elegans Hypothetical p... 29 4.3
Z47074-3|CAA87376.1| 295|Caenorhabditis elegans Hypothetical pr... 29 4.3
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein. 29 4.3
AF008590-1|AAB63299.1| 295|Caenorhabditis elegans paraquat resp... 29 4.3
U23179-5|AAK68210.2| 347|Caenorhabditis elegans Serpentine rece... 28 5.7
AF039042-5|AAC48246.1| 307|Caenorhabditis elegans Hypothetical ... 28 5.7
AF016447-2|AAG24012.1| 339|Caenorhabditis elegans Hypothetical ... 28 5.7
Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical pr... 28 7.6
AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein. 28 7.6
AF022974-8|AAX22288.1| 289|Caenorhabditis elegans Serpentine re... 28 7.6
>AF045646-13|AAK29831.1| 213|Caenorhabditis elegans Hypothetical
protein F56B3.11a protein.
Length = 213
Score = 95.9 bits (228), Expect = 3e-20
Identities = 53/171 (30%), Positives = 89/171 (52%), Gaps = 1/171 (0%)
Frame = -3
Query: 584 SEKESGLTKSKSKESASHVSTDVRPLGEKIKETTKTVSYXXXXXXXXXXXXXIFFYVFR- 408
S++E L +S +E H G K+ E ++ F YV
Sbjct: 45 SKQEHALQRSILEEVLVHEKAKPTTFGGKVAEKASN-TFMYTAVVAGIGLIGAFIYVLAG 103
Query: 407 ELFSSNSPNSIYSEALEKCKQDPRVEDALGAPIKGYGEEXXXXXXTHVSHAVYEKDGVKH 228
E F+ +SP +I+++AL + D R ++ GA I G+GEE HV+H YEKDG++
Sbjct: 104 EFFAQDSPQTIFNKALALVRDDGRCQEIFGASIAGFGEETSRGRRRHVAHHKYEKDGMQR 163
Query: 227 MRMRFYIKGIRNKGVVELDMKQNDYGNYMCRYLLVQLDDYSGKTFIIEDNR 75
+R+ F++KG R++G+ + +M+Q D G++ R+L V+ T ++ DNR
Sbjct: 164 IRVLFHVKGDRDEGIAQAEMEQRD-GDWQWRFLYVENKRRPKTTHVLIDNR 213
>Z48334-3|CAA88310.1| 471|Caenorhabditis elegans Hypothetical
protein F10B5.3 protein.
Length = 471
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/81 (25%), Positives = 34/81 (41%)
Frame = -2
Query: 558 IQKQRKCFPCIYRCKTLRRKNQRNYKNCFLHRRNTSRCRSHRCDFLLRFSRTVLK*QSEQ 379
I+K F C K R N +Y HR +C + C+F R +R + + +
Sbjct: 248 IEKVDGGFMCTVCRKIYGRYNSVSYHVTIYHRNPPIKCEENGCNFSTREARYIHFHKYYR 307
Query: 378 HLLRSS*EVQTGS*SRRCSWC 316
H + + G SR+C +C
Sbjct: 308 HHIPLPENIDLG--SRKCPFC 326
>AF022980-11|AAG24189.1| 330|Caenorhabditis elegans Serpentine
receptor, class j protein49 protein.
Length = 330
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +3
Query: 156 IILFHIKFNNTFISYPFNIESHSHMFHSIFFIYCMTDMGTSSPSCFFSITFYWCTK-SIF 332
++LF FN + F I+ H + FF++ + SP F + C+ +
Sbjct: 43 LLLFFAVFNMIYSVMNFLIQIDIHSYRYCFFLFLKNNWFPQSPQLNFHLLLARCSMLAAS 102
Query: 333 YSRILFALLKSF*VNAVRTVT*EQF 407
Y +L + + + + T+T E+F
Sbjct: 103 YGVLLIHFIYRYLIMSNSTLTNEKF 127
>Z83233-7|CAB05764.2| 340|Caenorhabditis elegans Hypothetical
protein K06B4.7 protein.
Length = 340
Score = 29.1 bits (62), Expect = 3.3
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Frame = +3
Query: 72 SSVVLNYKCFSTVVIKLYQQISAHIVSIIILFHIKFNNTFISYPFN------IESHSHMF 233
S+ VLN S VI + ++ ++L + F N IS F+ + SH F
Sbjct: 217 STAVLNQ--VSGQVIAKFVELKIKDEEYLLLILVMFCNPSISNDFSDKTKLALSSHQQAF 274
Query: 234 HSIFFIYCMTDMGTSSPSCF 293
S F YC + S+P+ F
Sbjct: 275 CSALFRYCQINYSKSAPTRF 294
>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
protein C47D12.1c protein.
Length = 4053
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/73 (23%), Positives = 34/73 (46%)
Frame = -3
Query: 398 SSNSPNSIYSEALEKCKQDPRVEDALGAPIKGYGEEXXXXXXTHVSHAVYEKDGVKHMRM 219
S+N P I + LE + R + P + E +++ ++ KDG +H+
Sbjct: 1027 SANLPK-IIKKLLEDFDPNNRTTEVYTCPRES-DRELFVNALLAMAYGIWNKDGFRHVYS 1084
Query: 218 RFYIKGIRNKGVV 180
+F+IK +R ++
Sbjct: 1085 KFFIKVLRQFALI 1097
>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
C47D12.1b protein.
Length = 4061
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/73 (23%), Positives = 34/73 (46%)
Frame = -3
Query: 398 SSNSPNSIYSEALEKCKQDPRVEDALGAPIKGYGEEXXXXXXTHVSHAVYEKDGVKHMRM 219
S+N P I + LE + R + P + E +++ ++ KDG +H+
Sbjct: 1033 SANLPK-IIKKLLEDFDPNNRTTEVYTCPRES-DRELFVNALLAMAYGIWNKDGFRHVYS 1090
Query: 218 RFYIKGIRNKGVV 180
+F+IK +R ++
Sbjct: 1091 KFFIKVLRQFALI 1103
>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
C47D12.1a protein.
Length = 4064
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/73 (23%), Positives = 34/73 (46%)
Frame = -3
Query: 398 SSNSPNSIYSEALEKCKQDPRVEDALGAPIKGYGEEXXXXXXTHVSHAVYEKDGVKHMRM 219
S+N P I + LE + R + P + E +++ ++ KDG +H+
Sbjct: 1033 SANLPK-IIKKLLEDFDPNNRTTEVYTCPRES-DRELFVNALLAMAYGIWNKDGFRHVYS 1090
Query: 218 RFYIKGIRNKGVV 180
+F+IK +R ++
Sbjct: 1091 KFFIKVLRQFALI 1103
>Z69302-10|CAA93267.1| 295|Caenorhabditis elegans Hypothetical
protein F40F8.7 protein.
Length = 295
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/81 (23%), Positives = 32/81 (39%)
Frame = -2
Query: 558 IQKQRKCFPCIYRCKTLRRKNQRNYKNCFLHRRNTSRCRSHRCDFLLRFSRTVLK*QSEQ 379
I++ + C K R N +Y HR +C C F R +R + ++ +
Sbjct: 154 IEQTENGYMCTVCRKVYGRYNSVSYHVTIYHRNPPIKCNVPNCQFTTREARYIHFHKNYR 213
Query: 378 HLLRSS*EVQTGS*SRRCSWC 316
H + + G SR+C C
Sbjct: 214 HGIPLPESIDQG--SRKCPHC 232
>Z47074-3|CAA87376.1| 295|Caenorhabditis elegans Hypothetical
protein F40F8.7 protein.
Length = 295
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/81 (23%), Positives = 32/81 (39%)
Frame = -2
Query: 558 IQKQRKCFPCIYRCKTLRRKNQRNYKNCFLHRRNTSRCRSHRCDFLLRFSRTVLK*QSEQ 379
I++ + C K R N +Y HR +C C F R +R + ++ +
Sbjct: 154 IEQTENGYMCTVCRKVYGRYNSVSYHVTIYHRNPPIKCNVPNCQFTTREARYIHFHKNYR 213
Query: 378 HLLRSS*EVQTGS*SRRCSWC 316
H + + G SR+C C
Sbjct: 214 HGIPLPESIDQG--SRKCPHC 232
>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
Length = 4064
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/73 (23%), Positives = 34/73 (46%)
Frame = -3
Query: 398 SSNSPNSIYSEALEKCKQDPRVEDALGAPIKGYGEEXXXXXXTHVSHAVYEKDGVKHMRM 219
S+N P I + LE + R + P + E +++ ++ KDG +H+
Sbjct: 1033 SANLPK-IIKKLLEDFDPNNRTTEVYTCPRES-DRELFVNALLAMAYGIWNKDGFRHVYS 1090
Query: 218 RFYIKGIRNKGVV 180
+F+IK +R ++
Sbjct: 1091 KFFIKVLRQFALI 1103
>AF008590-1|AAB63299.1| 295|Caenorhabditis elegans paraquat
responsive protein protein.
Length = 295
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/81 (23%), Positives = 32/81 (39%)
Frame = -2
Query: 558 IQKQRKCFPCIYRCKTLRRKNQRNYKNCFLHRRNTSRCRSHRCDFLLRFSRTVLK*QSEQ 379
I++ + C K R N +Y HR +C C F R +R + ++ +
Sbjct: 154 IEQTENGYMCTVCRKVYGRYNSVSYHVTIYHRNPPIKCNVPNCQFTTREARYIHFHKNYR 213
Query: 378 HLLRSS*EVQTGS*SRRCSWC 316
H + + G SR+C C
Sbjct: 214 HGIPLPESIDQG--SRKCPHC 232
>U23179-5|AAK68210.2| 347|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 2 protein.
Length = 347
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Frame = +3
Query: 147 VSIIILFHI----KFNNTFISYPFNIESHSHMFHSIFFIYCMTDMGTSSPSCFF 296
+ + +L+H+ KF ++FIS+ E+ + F+S F+ ++G +C F
Sbjct: 158 IDLALLYHVFRDEKFEDSFISFALVPETSAIPFNSYFWELLYAEIGNFICNCIF 211
>AF039042-5|AAC48246.1| 307|Caenorhabditis elegans Hypothetical
protein ZK697.3 protein.
Length = 307
Score = 28.3 bits (60), Expect = 5.7
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Frame = +3
Query: 108 VVIKLYQQISAHIVSIIILFHIK----FNNTFISYPFNIESHSHMFHSIFFIY-CMTDMG 272
++ K+ +Q+ + I S +ILF++ F F+S+ + + + + H I I+ C ++
Sbjct: 133 ILEKIKKQMFSCIFSSVILFYLTKVLIFVTAFMSFFYRLRNSTGSKHFIITIHLCKGNIV 192
Query: 273 TSSPSCFFSI---TFYWCTKSIFY 335
F I TF+W K +F+
Sbjct: 193 ELDMMKFLPILIITFFWLKKILFF 216
>AF016447-2|AAG24012.1| 339|Caenorhabditis elegans Hypothetical
protein C54F6.9 protein.
Length = 339
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = +3
Query: 108 VVIKLYQQISAHIVSIIILFHIKFNNTFISYPFNIESHSHMFHSIFFIYCMTDMGTSSPS 287
++I+L I+ +I F NN S ++ SH + F + F YC +PS
Sbjct: 235 IIIELKMTNEEFILLNLIFFLRIDNNLSESAKISLASHQNFFTNALFEYCQLKYERRAPS 294
Query: 288 CF 293
F
Sbjct: 295 RF 296
>Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical protein
F09E8.3 protein.
Length = 1369
Score = 27.9 bits (59), Expect = 7.6
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -3
Query: 671 DDEITIRSTTEKIPAILQTKFRTNT-RYFSSEKESGLTKSKSKESASHVSTDVRPLGE 501
D E I ST +P + F T SSEK+ L K+K + S S +S LG+
Sbjct: 1229 DGEKKIDSTKTSMPIVNSDNFIFKTPEPRSSEKQRSLLKNKGQASNSSISPSSLILGQ 1286
>AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein.
Length = 1369
Score = 27.9 bits (59), Expect = 7.6
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -3
Query: 671 DDEITIRSTTEKIPAILQTKFRTNT-RYFSSEKESGLTKSKSKESASHVSTDVRPLGE 501
D E I ST +P + F T SSEK+ L K+K + S S +S LG+
Sbjct: 1229 DGEKKIDSTKTSMPIVNSDNFIFKTPEPRSSEKQRSLLKNKGQASNSSISPSSLILGQ 1286
>AF022974-8|AAX22288.1| 289|Caenorhabditis elegans Serpentine
receptor, class sx protein10 protein.
Length = 289
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 57 GII*FSSVVLNYKCFSTVVIKLYQQISAHIVSIIILFHIKFNNTFISYPF 206
G + F + + YKCF + ++ Q + I+ +II+ I F+ +PF
Sbjct: 65 GALNFMNPMNRYKCFWFISYFIFSQTAQDIIMLIIVLDIL---CFVQFPF 111
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,751,905
Number of Sequences: 27780
Number of extensions: 262820
Number of successful extensions: 738
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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