Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12e13
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.2  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   5.0  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   6.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   8.7  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 420 KENHTCDSDTEK 455
           K NH C+ DTEK
Sbjct: 63  KNNHHCNQDTEK 74


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 210 IESHSHMFHSIFFIYCMTD 266
           IES SH    + FI+ MTD
Sbjct: 150 IESLSHTTQDLVFIWNMTD 168


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -3

Query: 617 TKFRTNTRYFSSEKESGLTKSKSKESASHVSTDVRPL-GEKIKETTK 480
           TK+ +   YFSS+       S+S+ S+     D RPL  E I ++ K
Sbjct: 301 TKYGSGECYFSSD------LSESETSSDEEEADTRPLKKEPITQSNK 341


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 638 KIPAILQTKFRTNTRYFSSEKESGLTK 558
           K PAI ++    N  YF  +++S + K
Sbjct: 149 KPPAIYKSSCEINVEYFPFDEQSCIMK 175


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,052
Number of Sequences: 438
Number of extensions: 3285
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)