Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12e12
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    70   4e-13
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    27   3.3  
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   4.4  
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.4  
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    27   4.4  
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom...    27   4.4  
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   4.4  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    26   5.8  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    26   7.7  
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c...    26   7.7  

>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 656

 Score = 70.1 bits (164), Expect = 4e-13
 Identities = 52/232 (22%), Positives = 109/232 (46%), Gaps = 4/232 (1%)
 Frame = -2

Query: 843  VQMCGTCCIYEIIIATTLKKVLEAVSPSLSHQELHLRIYVMITMVPLIAVCLIRNMRYLA 664
            V   G    Y   +A+TL+  ++ +S +  H+E HL +++ I  +  + + L+R +  L+
Sbjct: 359  VSQIGFSSAYISFVASTLQACVKVISTT--HREYHLAVFIFIQFLVFVPLSLVRKISKLS 416

Query: 663  PFSLLADLFIGICMAIALYYGMSSTVPIR--ERPAWKNYGGLIRGSSIILYALSGITATL 490
              +L+AD+FI +   + LY+    T+  +     A  N         + ++   GI   L
Sbjct: 417  ATALIADVFI-LLGILYLYFWDVITLATKGIADVAMFNKTDFSLFIGVAIFTYEGICLIL 475

Query: 489  PVENNMERPKLFFIVLQYGMSVVLCLVTVTGFFGYWGFGENCQGPITVHMGVSEVFPLIL 310
            P++  M +PK    +L   M+ +  L    G   Y  FG   +  + ++M  S  F +I+
Sbjct: 476  PIQEQMAKPKNLPKLLTGVMAAISLLFISIGLLSYAAFGSKVKTVVILNMPES-TFTVII 534

Query: 309  QFKLILMLCVTFGVKFWVPFRLVWY-YLGKLHNRDRKL-WERIYMMFLIILI 160
            QF   + + ++  ++ +    ++      +   R+RK+ W + Y+  LI+++
Sbjct: 535  QFLYAIAILLSTPLQLFPAIAIIEQGIFTRSGKRNRKIKWRKNYLRVLIVIL 586


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 109 KAGNIMAVNGNKKLPIRD*DNQKHHINSFP 198
           + GN   +  N   PI + D Q +HI+ FP
Sbjct: 71  RKGNESLMTENSNYPISEQDTQHNHISDFP 100


>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = -2

Query: 705 LIAVCLIRNMRYLAPFSLLADLFIGICMA--IALYYGMSSTVPIRERPAWKNYGGLIRGS 532
           LI + ++ +M+   P S+L    I IC+A  I   YGM + V I     WK+      G 
Sbjct: 254 LIKLLILLSMK--KPISILLSQPILICVACTIGSIYGMINLVLIAFSEVWKSSYDFSPGI 311

Query: 531 SIILY 517
           S ++Y
Sbjct: 312 SGLMY 316


>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 430

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
 Frame = -2

Query: 726 VMITMVPLIAVCLIRN--MRYLAPFSLLAD---LFIGICMAIALYYGMSSTVPIR-ERPA 565
           + +  +PL  V + R   ++ ++  S + D   L    C+A+      ++ V  + E  +
Sbjct: 165 ITVKGMPLADVLVFRKKVLKLVSQLSFMTDRKELVYTTCLALEDDDAYTNFVSAQQEDSS 224

Query: 564 WKNYGGLIRGSSIILYALSGITATLPV 484
            K YGG++ G S   YA +G +  LP+
Sbjct: 225 CKFYGGILIGVSHCKYAAAGASYPLPI 251


>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 380 PQYPKNPVTVTKHSTTDIPYCKTMKNNFGLSIL-FSTGNVAVIPL 511
           PQ PK     T +   D PY   +KN+F L++L +   NV  + L
Sbjct: 102 PQKPKRAFPKTPYKILDAPY---LKNDFYLNLLDWGQSNVLAVGL 143


>SPBPB2B2.16c |||MFS family membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = -2

Query: 705 LIAVCLIRNMRYLAPFSLLADLFIGICMA--IALYYGMSSTVPIRERPAWKNYGGLIRGS 532
           LI + ++ +M+   P S+L    I IC+A  I   YGM + V I     WK+      G 
Sbjct: 254 LIKLLILLSMK--KPISILLSQPILICVACTIGSIYGMINLVLIAFSEVWKSSYDFSPGI 311

Query: 531 SIILY 517
           S ++Y
Sbjct: 312 SGLMY 316


>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = -2

Query: 705 LIAVCLIRNMRYLAPFSLLADLFIGICMA--IALYYGMSSTVPIRERPAWKNYGGLIRGS 532
           LI + ++ +M+   P S+L    I IC+A  I   YGM + V I     WK+      G 
Sbjct: 254 LIKLLILLSMK--KPISILLSQPILICVACTIGSIYGMINLVLIAFSEVWKSSYDFSPGI 311

Query: 531 SIILY 517
           S ++Y
Sbjct: 312 SGLMY 316


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 302 LNCKINGNTSDTPM*TVIGPWQFSPNPQYPKNPVT 406
           L  ++  N S  P  T+ G  +++P P+YP  P+T
Sbjct: 859 LQSRLRSNMSWQPEATIKGDQEYAPPPKYP--PIT 891


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +2

Query: 272 PKVTQSIKISLNCKINGNTSDTPM*TVIGPWQFSPNPQYPKNPVTVTKHSTTD 430
           P ++ +  IS    I+  T   P      P+  +  P   K+PVTVT  S T+
Sbjct: 650 PSMSFANNISSRSVISAATDSKPSTRTSPPFVNNTKPIVAKSPVTVTASSETN 702


>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -2

Query: 549 GLIRGS-SIILYALSGITATLPVENNMERPKLFFIVLQYGMSVVLCLVTVTGF 394
           GL  G+ + IL  +SG +  LP+ N  +R    + +L+ GM   L    V+GF
Sbjct: 189 GLFVGADAAILRTVSGSSVQLPIYNWAKRMIEHYNLLEEGMIKHLTASAVSGF 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,724,053
Number of Sequences: 5004
Number of extensions: 82379
Number of successful extensions: 197
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)