Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12e12
(847 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0264 + 27263562-27264830 58 7e-09
04_04_0819 - 28312667-28313219,28315157-28316430 54 1e-07
07_01_0882 + 7342606-7342842,7343601-7344245,7344515-7344907 52 6e-07
03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434 46 5e-05
03_02_0338 + 7614199-7614450,7614518-7614703,7614815-7614927,761... 38 0.010
10_01_0267 - 2828966-2829340,2831164-2831629,2833390-2833487,283... 37 0.018
11_01_0433 - 3323372-3324616,3324708-3324905 35 0.071
01_05_0584 + 23435620-23436408,23436966-23437508 34 0.12
01_05_0509 + 22811184-22812038,22813493-22814020 34 0.12
02_01_0681 - 5059082-5059217,5059318-5059783,5059869-5060072,506... 33 0.29
06_01_1136 + 9407282-9407663,9408075-9408227,9408336-9408539,940... 32 0.50
02_05_0601 - 30278455-30278572,30280211-30280676,30280748-302809... 32 0.50
01_01_0094 - 730484-731570,732030-732715 31 0.87
05_05_0039 - 21782093-21782320,21782383-21782754,21783031-217834... 31 1.5
02_05_0024 + 25152090-25153151,25153232-25154145,25154499-251547... 30 2.7
12_02_0797 - 23230441-23230757,23230922-23231069,23231352-232325... 29 4.7
11_01_0022 + 151233-151515,152632-152852,153579-153656,154558-15... 29 4.7
01_06_0986 - 33602714-33602741,33603037-33603146,33603401-336036... 29 6.2
01_05_0028 - 17337455-17337664,17338407-17338697,17339926-173402... 29 6.2
>02_05_0264 + 27263562-27264830
Length = 422
Score = 58.4 bits (135), Expect = 7e-09
Identities = 56/224 (25%), Positives = 95/224 (42%), Gaps = 4/224 (1%)
Frame = -2
Query: 825 CCIYEIIIATTLKKVLEAVSPSLSHQELHLRIYVMITMVPL-IAVCLIRNMRYLAPFSLL 649
C Y I I+ T+ + +PS S+ L + + M+P + + I+ + LAP S+
Sbjct: 129 CVGYLIFISNTMAHLYPVFAPS-SNALLSPKALFIWAMLPFQLGLNSIKTLTLLAPLSIF 187
Query: 648 ADLFIGICMAIALYYGMSSTVPIRERPAWKNYGGL---IRGSSIILYALSGITATLPVEN 478
AD+ M + L G +V + + P +GGL + G + +YA GI LP+E
Sbjct: 188 ADVVDLGAMGVVL--GEDVSVWLAKPPPVFAFGGLSAILYGIGVSVYAFEGIGMVLPLEA 245
Query: 477 NMERPKLFFIVLQYGMSVVLCLVTVTGFFGYWGFGENCQGPITVHMGVSEVFPLILQFKL 298
K F L M + + + G GY FG+ + IT ++G L +
Sbjct: 246 EAANKKKFGTTLGLSMGFIAVMYGLFGAMGYIAFGDATRDIITTNLGTG-----WLSAAV 300
Query: 297 ILMLCVTFGVKFWVPFRLVWYYLGKLHNRDRKLWERIYMMFLII 166
L LC+ V V+ +L + R W +++ L +
Sbjct: 301 QLGLCINLFFTMPVMMHPVYEVAERLLHGKRYCWWLRWLLVLAV 344
>04_04_0819 - 28312667-28313219,28315157-28316430
Length = 608
Score = 54.0 bits (124), Expect = 1e-07
Identities = 51/223 (22%), Positives = 93/223 (41%), Gaps = 3/223 (1%)
Frame = -2
Query: 825 CCIYEIIIATTLKKVLEAVSPSLSHQELHLRIYVMITMVPL-IAVCLIRNMRYLAPFSLL 649
C Y I I+ T+ + S S L + + M+P + + I+ + LAP S+
Sbjct: 131 CVGYLIFISNTMAHLYPVGDSSPSSPLLTAKAIFIWVMLPFQLGLNSIKTLTLLAPLSIF 190
Query: 648 ADLFIGICMAIALYYGMSSTVPIRERPAWKNYGG--LIRGSSIILYALSGITATLPVENN 475
AD+ M + L +S+ + + P + + G ++ G + +YA GI LP+E
Sbjct: 191 ADVVDLGAMGVVLGQDVSTWLA-NKPPVFASAGPTEILYGLGVAVYAFEGIGMVLPLEAE 249
Query: 474 MERPKLFFIVLQYGMSVVLCLVTVTGFFGYWGFGENCQGPITVHMGVSEVFPLILQFKLI 295
+ F L M+ + + + G GY FG + IT ++G L +
Sbjct: 250 AADKRKFGGTLALSMAFIAVMYGLFGAMGYLAFGAATRDIITTNLGTG-----WLSVTVQ 304
Query: 294 LMLCVTFGVKFWVPFRLVWYYLGKLHNRDRKLWERIYMMFLII 166
L LC+ V V+ +L R R W +++ +++
Sbjct: 305 LGLCINLFFTMPVMMNPVYEVAERLLCRKRYAWWLRWLLVMVV 347
>07_01_0882 + 7342606-7342842,7343601-7344245,7344515-7344907
Length = 424
Score = 52.0 bits (119), Expect = 6e-07
Identities = 32/132 (24%), Positives = 65/132 (49%), Gaps = 2/132 (1%)
Frame = -2
Query: 729 YVMITMVPL-IAVCLIRNMRYLAPFSLLADLFIGICMAIALYYGMS-STVPIRERPAWKN 556
++ ++P+ IA+ IR++ L+PFS+ AD+ + MAI + + P R A+
Sbjct: 153 FIFAILLPMQIALSFIRSLSSLSPFSIFADVCNVLAMAIVIKEDLQLFDHPFANRSAFNG 212
Query: 555 YGGLIRGSSIILYALSGITATLPVENNMERPKLFFIVLQYGMSVVLCLVTVTGFFGYWGF 376
+ + ++ G + TL +E++M + F VL + ++ + G GY +
Sbjct: 213 LWAIPFTFGVAVFCFEGFSMTLALESSMAERRKFRWVLSQAVVGIIIVYACFGVCGYLAY 272
Query: 375 GENCQGPITVHM 340
GE + IT+++
Sbjct: 273 GEATKDIITLNL 284
>03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434
Length = 418
Score = 45.6 bits (103), Expect = 5e-05
Identities = 39/160 (24%), Positives = 74/160 (46%), Gaps = 7/160 (4%)
Frame = -2
Query: 726 VMITMVPL-IAVCLIRNMRYLAPFSLLADLFIGICMA------IALYYGMSSTVPIRERP 568
V+ ++P A+ IR++ LAPFS+LAD + +A + L G + P + R
Sbjct: 151 VLAVLLPAEAALSFIRSLSSLAPFSILADACTVLAVATVVREDVQLLAGRGGS-PFQGRS 209
Query: 567 AWKNYGGLIRGSSIILYALSGITATLPVENNMERPKLFFIVLQYGMSVVLCLVTVTGFFG 388
A G+ + ++ G TL +E +M + F VL + ++ V + G G
Sbjct: 210 ALAGLWGVPFACGVAVFCFEGFCLTLALEASMSDRRRFRPVLLHAIAGVTAVYVCFGVCG 269
Query: 387 YWGFGENCQGPITVHMGVSEVFPLILQFKLILMLCVTFGV 268
Y +G+ + +T+++ + ++ L + L +TF V
Sbjct: 270 YLAYGDVTRDIVTLNL-PNNWSTAAVKIVLCVALALTFPV 308
>03_02_0338 +
7614199-7614450,7614518-7614703,7614815-7614927,
7615023-7615206,7615343-7615440,7616113-7616578,
7617342-7617683
Length = 546
Score = 37.9 bits (84), Expect = 0.010
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 5/121 (4%)
Frame = -2
Query: 537 GSSIILYALSGITATLPVENNMERPKLFFIVLQYGMSVVLCLVTVTGFFGYWGFGENCQG 358
G++ ILY G T+ + + M RP+ F + VL L + YW FG+
Sbjct: 263 GATNILYTFGGHAVTVEIMHAMWRPQKFKAIYLMATLYVLTLTLPSAASVYWAFGDE--- 319
Query: 357 PITVHMGVSEVFP--LILQFKLILMLC---VTFGVKFWVPFRLVWYYLGKLHNRDRKLWE 193
+ H + P ++LML +TFG P VW L LH+ R L++
Sbjct: 320 -LLTHSNALALLPRTAFRDAAVVLMLIHQFITFGFA-CTPLYFVWEKLIGLHD-CRSLFK 376
Query: 192 R 190
R
Sbjct: 377 R 377
>10_01_0267 -
2828966-2829340,2831164-2831629,2833390-2833487,
2833782-2834078,2834287-2834694
Length = 547
Score = 37.1 bits (82), Expect = 0.018
Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 5/112 (4%)
Frame = -2
Query: 537 GSSIILYALSGITATLPVENNMERPKLFFIVLQYGMSVVLCLVTVTGFFGYWGFGENCQG 358
G++ ILY G T+ + + M RP+ F + VL L + YW FG+
Sbjct: 253 GATNILYTFGGHAVTVEIMHAMWRPQKFKAIYLLATVYVLTLTLPSASAAYWAFGD---- 308
Query: 357 PITVHMGVSEVFPLI--LQFKLILMLC---VTFGVKFWVPFRLVWYYLGKLH 217
+ H + P ++LML +TFG P VW L LH
Sbjct: 309 ALLTHSNALALLPRTPWRDAAVVLMLIHQFITFGFA-CTPLYFVWEKLVGLH 359
>11_01_0433 - 3323372-3324616,3324708-3324905
Length = 480
Score = 35.1 bits (77), Expect = 0.071
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -2
Query: 537 GSSIILYALSGITATLPVENNMERPKLFFIVLQYGMSVVLCLVTVTGFFGYWGFGE 370
G++ ILY G T+ + + M RP+ F ++ + VL L + YW FG+
Sbjct: 247 GATNILYTFGGHAVTVEIMHAMWRPRRFKMIYLAATAYVLTLTLPSAAAMYWAFGD 302
>01_05_0584 + 23435620-23436408,23436966-23437508
Length = 443
Score = 34.3 bits (75), Expect = 0.12
Identities = 36/170 (21%), Positives = 76/170 (44%), Gaps = 4/170 (2%)
Frame = -2
Query: 810 IIIATTLKKVLEAVSPSLSHQELH-LRIYVMITMVPLIAVCLIRNMRYLAPFSLLADLFI 634
I+ L K+L + ++H ++++++ ++ ++N+ LA S + L
Sbjct: 142 ILEGDNLDKLLPGTVVKILGYQVHGKQLFMLVAAAVILPTTWLKNLSMLAYVSAVG-LVS 200
Query: 633 GICMAIALYY-GMSSTVPIRERPAWKNYGGLIRGSSIILYALSGITATLPVENNMERPKL 457
+ + ++L + G++ + N GL S+ +G V ++M K
Sbjct: 201 SVALTVSLVWAGVADKGFHMAGSSILNLSGLPTALSLYFVCFAGHGVFPTVYSSMRARKD 260
Query: 456 FFIVLQYGMSVVLCLVT--VTGFFGYWGFGENCQGPITVHMGVSEVFPLI 313
F VL +S VLC + VT GY +GE+ Q +T+++ +++ I
Sbjct: 261 FPKVLL--ISSVLCSLNYAVTAVLGYKIYGEDVQAQVTLNLPTGKLYTRI 308
>01_05_0509 + 22811184-22812038,22813493-22814020
Length = 460
Score = 34.3 bits (75), Expect = 0.12
Identities = 36/169 (21%), Positives = 73/169 (43%), Gaps = 3/169 (1%)
Frame = -2
Query: 810 IIIATTLKKVLEAVSPSLSHQELH-LRIYVMITMVPLIAVCLIRNMRYLAPFSLLADLFI 634
I+ L K+L + + ++H +++V+ ++ ++N+ LA S + +
Sbjct: 164 ILEGDNLDKLLPGIVVEILGYQVHGKQLFVLAAAAVILPTTWLKNLSMLAYVSAVGLVSS 223
Query: 633 GICMAIALYYGMSSTVPIRERPAWKNYGGLIRGSSIILYALSGITATLPVENNMERPKLF 454
A ++ G++ E + N L S+ +G V ++M K F
Sbjct: 224 VALTASLVWAGVAGKGFHMEGSSLLNLSELPTALSLYFVCFAGHGVFPTVYSSMNSKKDF 283
Query: 453 FIVLQYGMSVVLCLVT--VTGFFGYWGFGENCQGPITVHMGVSEVFPLI 313
VL +S+VLC + VT GY +GE+ Q +T+ + +++ I
Sbjct: 284 PKVLL--ISLVLCSLNYAVTAVLGYLIYGEDVQAQVTLSLPTGKLYTRI 330
>02_01_0681 -
5059082-5059217,5059318-5059783,5059869-5060072,
5060163-5060315,5060849-5061269
Length = 459
Score = 33.1 bits (72), Expect = 0.29
Identities = 33/161 (20%), Positives = 69/161 (42%), Gaps = 11/161 (6%)
Frame = -2
Query: 708 PLIAVCLIRNMRYLAPFSL-LADLFIGICMAIALYYGMSSTVPIR----ERPAWKNYGGL 544
PL++ + ++RY + S+ LA +F+ I IA+ + TV I E + L
Sbjct: 184 PLVSFKRLDSLRYTSALSVALAVVFVVITAGIAIVRLIEGTVEIPKLFPELDGTNSIWEL 243
Query: 543 IRGSSIILYALSGITATLPVENNMERPKLFFIVLQYGMSVVLCLVTVTGFFGYWGFGENC 364
+++ A ++N +E ++Q +++ + T FF Y FGE
Sbjct: 244 FTAVPVVVTAYICHYNVHSIDNELEDRTQTKPIVQTSLALCSSVYIATSFFAYLLFGEGT 303
Query: 363 QGPI------TVHMGVSEVFPLILQFKLILMLCVTFGVKFW 259
+ +H+ S VF +++ ++ + + F + F+
Sbjct: 304 LADVLANFDSNLHIPFSSVFNDVVRVSYVVHIMLVFPIVFF 344
>06_01_1136 +
9407282-9407663,9408075-9408227,9408336-9408539,
9408709-9409174,9409434-9409575
Length = 448
Score = 32.3 bits (70), Expect = 0.50
Identities = 26/129 (20%), Positives = 55/129 (42%), Gaps = 5/129 (3%)
Frame = -2
Query: 738 LRIYVMITMVPLIAVCLIRNMRYLAPFSL-LADLFIGICMAIALYYGMSSTVPIRER--- 571
L + ++ PL + + ++ Y + S+ LA +F+ I IA+ + +P+ +
Sbjct: 161 LLVTTLVVFTPLACLKRVDSLSYTSAISVALAVVFVIITAGIAIVKLIKGQIPMPKLFPD 220
Query: 570 -PAWKNYGGLIRGSSIILYALSGITATLPVENNMERPKLFFIVLQYGMSVVLCLVTVTGF 394
P + L +++ A P+ N ++ P ++ + + + T F
Sbjct: 221 VPDLASIWELFTAVPVLVTAYVCHYNVHPIHNELKDPSQIKPIVHTSLVLCSTVYITTSF 280
Query: 393 FGYWGFGEN 367
FGY FGE+
Sbjct: 281 FGYLLFGES 289
>02_05_0601 -
30278455-30278572,30280211-30280676,30280748-30280951,
30281065-30281220,30281336-30281738
Length = 448
Score = 32.3 bits (70), Expect = 0.50
Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 8/129 (6%)
Frame = -2
Query: 732 IYVMITM---VPLIAVCLIRNMRYLAPFSL-LADLFIGICMAIALYYGMSSTVPIRER-- 571
I V++T+ PL + +++Y + S+ LA +F+ I I M +P+ +
Sbjct: 168 ILVIVTLGVFTPLTCFKRVDSLKYTSALSVALAVVFVVITAGITTIKLMRGQIPMPKLFP 227
Query: 570 --PAWKNYGGLIRGSSIILYALSGITATLPVENNMERPKLFFIVLQYGMSVVLCLVTVTG 397
W + L + +++ A P+ N ++ +++ + + L + T T
Sbjct: 228 DVHDWSSTWRLFTAAPVLVTAYICHYNVHPIHNELKDHSQIRPIVRASLLLCLAVYTTTS 287
Query: 396 FFGYWGFGE 370
FFG+ FGE
Sbjct: 288 FFGFLLFGE 296
>01_01_0094 - 730484-731570,732030-732715
Length = 590
Score = 31.5 bits (68), Expect = 0.87
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = -1
Query: 619 HSSLLWNVIDGAYTRKTRLEELWWSDQRQQYYSVRFKRYYSHV 491
H +W + +YTR+ L+ +WW+ +V+ Y HV
Sbjct: 103 HRPFIWGIPGPSYTRELTLQGIWWATFVNCSQAVKNNNKYIHV 145
>05_05_0039 -
21782093-21782320,21782383-21782754,21783031-21783496,
21784896-21784993,21785179-21785362,21785462-21785574,
21785942-21786127,21786191-21786364
Length = 606
Score = 30.7 bits (66), Expect = 1.5
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 5/105 (4%)
Frame = -2
Query: 537 GSSIILYALSGITATLPVENNMERPKLFFIVLQYGMSVVLCLVTVTGFFGYWGFGENCQG 358
G++ ILY G T+ + + M +P+ F + V L + YW FG+
Sbjct: 237 GATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLVATLYVFTLTLPSASAMYWAFGD---- 292
Query: 357 PITVHMGVSEVFPLI--LQFKLILMLC---VTFGVKFWVPFRLVW 238
+ H + P +ILML +TFG P VW
Sbjct: 293 ALLTHSNAFSLLPRSGWRDAAVILMLIHQFITFGFA-CTPLYFVW 336
>02_05_0024 +
25152090-25153151,25153232-25154145,25154499-25154709,
25154757-25154921
Length = 783
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -2
Query: 645 DLFIGICMAIALYYGMSSTVPIRERPAWKNYGGLIRGSSIILYALSG 505
DL +GI A + G P W YGGL+RG++ A G
Sbjct: 213 DLHVGIRRAKRGFCGGGGGAEEASLPGWDQYGGLMRGNASPCAAAKG 259
>12_02_0797 -
23230441-23230757,23230922-23231069,23231352-23232562,
23232639-23232894,23234073-23234309
Length = 722
Score = 29.1 bits (62), Expect = 4.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 249 RLVWYYLGKLHNRDRKL 199
R+ W+YLGK+H D +L
Sbjct: 681 RMAWFYLGKVHKHDGRL 697
>11_01_0022 +
151233-151515,152632-152852,153579-153656,154558-154674,
155970-156316,156504-157032
Length = 524
Score = 29.1 bits (62), Expect = 4.7
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +1
Query: 370 FTESPIPKKSCNCXXXXXXXXXVLQNNEE*FWPFHI 477
+TE PIP+ +C C V + + WP H+
Sbjct: 102 YTEGPIPRYACCCDALQIFSLQVKEAKDGLDWPLHV 137
>01_06_0986 -
33602714-33602741,33603037-33603146,33603401-33603601,
33604605-33604697,33604937-33605182,33606007-33606372,
33606459-33606599,33607170-33607526
Length = 513
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -2
Query: 285 CVTFGVKFWVPFRLVW--YYLGKLHNRDRKLWE 193
C+ V F P+R+ W Y++G+ H D K WE
Sbjct: 128 CIDLYV-FATPYRVTWDYYFVGREHTLDFKEWE 159
>01_05_0028 -
17337455-17337664,17338407-17338697,17339926-17340218,
17340812-17340959,17341177-17341219,17341985-17342307
Length = 435
Score = 28.7 bits (61), Expect = 6.2
Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Frame = -2
Query: 555 YGGLIRGSSIILYALSGITATLPVENNMERPKLFFIVLQYGMSVVLCLVTVTGFFGYWGF 376
Y GL+ GS +ILY + I LP ER L IVL G SV+ L FF Y
Sbjct: 273 YCGLLLGSPVILYEI--IAFVLPGLTRDERKFLGPIVL--GSSVLFYLGI---FFSYTVL 325
Query: 375 GENCQGPITVHM--GVSEVFPLILQFKLILMLCVTFGVKFWVP 253
+ V ++ + F+ +L+L + G+ F VP
Sbjct: 326 APAALNFFVNYADGAVESLWSIDQYFEFVLVLLFSTGLSFQVP 368
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,916,339
Number of Sequences: 37544
Number of extensions: 484971
Number of successful extensions: 1006
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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