Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12e12
(847 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021481-5|CAA16336.2| 455|Caenorhabditis elegans Hypothetical ... 99 2e-21
AF025468-4|AAB71045.1| 449|Caenorhabditis elegans Hypothetical ... 87 1e-17
Z11505-1|CAA77582.1| 460|Caenorhabditis elegans Hypothetical pr... 74 1e-13
U28928-5|AAQ01535.1| 434|Caenorhabditis elegans Hypothetical pr... 70 2e-12
U28928-4|AAA68337.2| 489|Caenorhabditis elegans Hypothetical pr... 70 2e-12
AL031630-22|CAA20995.2| 454|Caenorhabditis elegans Hypothetical... 63 3e-10
Z97191-2|CAB10025.1| 481|Caenorhabditis elegans Hypothetical pr... 57 1e-08
Z30423-12|CAA83006.2| 486|Caenorhabditis elegans Hypothetical p... 35 0.084
AF031935-1|AAB87066.1| 486|Caenorhabditis elegans UNC-47 protein. 35 0.084
Z81077-6|CAB03069.1| 167|Caenorhabditis elegans Hypothetical pr... 32 0.59
Z93389-1|CAB07668.1| 346|Caenorhabditis elegans Hypothetical pr... 30 2.4
AL021474-3|CAD54163.1| 519|Caenorhabditis elegans Hypothetical ... 29 4.2
Z81142-1|CAB03502.1| 334|Caenorhabditis elegans Hypothetical pr... 28 7.3
U41272-8|AAA82451.2| 243|Caenorhabditis elegans 2 (zwei) ig-dom... 28 7.3
Z70037-3|CAC42352.1| 902|Caenorhabditis elegans Hypothetical pr... 28 9.6
Z70037-2|CAA93879.2| 906|Caenorhabditis elegans Hypothetical pr... 28 9.6
D84668-1|BAA86913.1| 902|Caenorhabditis elegans CLH-1 protein. 28 9.6
AF173170-1|AAF13163.1| 868|Caenorhabditis elegans CLC chloride ... 28 9.6
>AL021481-5|CAA16336.2| 455|Caenorhabditis elegans Hypothetical
protein Y43F4B.7 protein.
Length = 455
Score = 99 bits (238), Expect = 2e-21
Identities = 49/206 (23%), Positives = 108/206 (52%), Gaps = 5/206 (2%)
Frame = -2
Query: 843 VQMCGTCCIYEIIIATTLKKVLEAVSPSLSHQELHLR--IYVMITMVPLIAVCLIRNMRY 670
+ G CC+Y + +A L+ ++ +HL +++++ ++P++++C IR +
Sbjct: 150 ISQLGFCCVYFVFMADNLEDFFN------NNTSIHLSKAVWMLLLLIPMLSICSIRRLSI 203
Query: 669 LAPFSLLADLFIGICMAIALYYGMSSTVPIRERPAWKNYGGLIRGSSIILYALSGITATL 490
LAPF++ A++ + +A+ L++ +S PI P + L +++A G+ +
Sbjct: 204 LAPFAMAANVVYVVAVAVVLFFFLSDLRPISSLPWFGKATDLPLFFGTVMFAFEGVAVIM 263
Query: 489 PVENNMERPKLFFI---VLQYGMSVVLCLVTVTGFFGYWGFGENCQGPITVHMGVSEVFP 319
P+EN M+ P F VL VVL + +VTGF+GY G + + T+++ ++ +
Sbjct: 264 PIENRMQSPHAFISWNGVLNSSCLVVLAIFSVTGFYGYLSLGNDVKDTATLNLPMTPFYQ 323
Query: 318 LILQFKLILMLCVTFGVKFWVPFRLV 241
I + + + +++ ++F+VP +
Sbjct: 324 TI-KLMFVACIMISYPLQFYVPMERI 348
>AF025468-4|AAB71045.1| 449|Caenorhabditis elegans Hypothetical
protein T27A1.5 protein.
Length = 449
Score = 87.4 bits (207), Expect = 1e-17
Identities = 53/204 (25%), Positives = 100/204 (49%), Gaps = 3/204 (1%)
Frame = -2
Query: 843 VQMCGTCCIYEIIIATTLKKVLEAVSPSLSHQELHLRIYVMITMVPLIAVCLIRNMRYLA 664
V G CC+Y + +A LK+ + S S+ + ++ + ++P+ A+C IR ++ LA
Sbjct: 140 VAQFGFCCVYFVFMADNLKQFFDQTS-SIHISQAG---WIALLLIPISALCTIRELKALA 195
Query: 663 PFSLLADLFIGICMAIALYYGMSSTVPIRERPAWKNYGGLIRGSSIILYALSGITATLPV 484
P + +A+ I + I L S P+ PA+ L +++A G+ LP+
Sbjct: 196 PLAAVANFVYIIAVVIVLADLFSDWQPLDSLPAFGAVENLPLFFGTVMFAFEGVAVVLPI 255
Query: 483 ENNMERPKLFFI---VLQYGMSVVLCLVTVTGFFGYWGFGENCQGPITVHMGVSEVFPLI 313
EN M P F VL +VL + GFFG+ +G + + +T+++ + + I
Sbjct: 256 ENQMNEPIHFITPNGVLNTSCILVLLVYMTVGFFGFLRYGNDIKDTLTLNLPQTPFYQAI 315
Query: 312 LQFKLILMLCVTFGVKFWVPFRLV 241
+ +L + V++ ++F+VP V
Sbjct: 316 -KVMFVLCILVSYPLQFYVPMERV 338
>Z11505-1|CAA77582.1| 460|Caenorhabditis elegans Hypothetical
protein F59B2.2 protein.
Length = 460
Score = 74.1 bits (174), Expect = 1e-13
Identities = 49/185 (26%), Positives = 86/185 (46%), Gaps = 3/185 (1%)
Frame = -2
Query: 831 GTCCIYEIIIATTLKKVLEAVSPSLSHQELHLRIYVMITMVPLIAVCLIRNMRYLAPFSL 652
G C + + I+ L ++ HQ++ L V + + L + MR ++ F+L
Sbjct: 143 GMCSVAILFISDNLVNLVGDHLGGTRHQQMILMATVSLFFILLTN--MFTEMRIVSFFAL 200
Query: 651 LADLFIGICMAIALYYGMSSTVPIRERPAWKNYGGLIRGSSIILYALSGITATLPVENNM 472
++ +F I A+ + Y + + PA N+ G I + +YA G T LP+EN +
Sbjct: 201 VSSVFFVIGAAVIMQYTVQQPNQWDKLPAATNFTGTITMIGMSMYAFEGQTMILPIENKL 260
Query: 471 ERPKLF---FIVLQYGMSVVLCLVTVTGFFGYWGFGENCQGPITVHMGVSEVFPLILQFK 301
+ P F F VL M + +T GFFGY GFG++ IT ++ ++ + F
Sbjct: 261 DNPAAFLAPFGVLSTTMIICTAFMTALGFFGYTGFGDSIAPTITTNVPKEGLYSTVNVFL 320
Query: 300 LILML 286
++ L
Sbjct: 321 MLQSL 325
>U28928-5|AAQ01535.1| 434|Caenorhabditis elegans Hypothetical
protein C44B7.6b protein.
Length = 434
Score = 70.1 bits (164), Expect = 2e-12
Identities = 49/202 (24%), Positives = 104/202 (51%), Gaps = 4/202 (1%)
Frame = -2
Query: 831 GTCCIYEIIIATTLKKVLEAVSPSLSHQELHLRIYVMITMVPLIAVCLIRNMRYLAPFSL 652
G CC + I + L ++LE V + + ++ M+ ++ V L +MR L+ SL
Sbjct: 126 GICCCFYIFVVYHLHELLEFVMNDVPSRAT---LFPMVLPAFILLVSL-SSMRALSLVSL 181
Query: 651 LADLFIGICMAIALYYGMSST-VPIRERPAWKNYGGLIRGSSIILYALSGITATLPVENN 475
+ + I +A+ ++ +++ + + P + G++ + ILYAL G LP+EN
Sbjct: 182 GGNFLMLIALAVIMFQLLTTEHKKLADLPPVTDLMGIVSAAGTILYALEGQAMVLPLENR 241
Query: 474 MERP---KLFFIVLQYGMSVVLCLVTVTGFFGYWGFGENCQGPITVHMGVSEVFPLILQF 304
M++P K F VL G+ +V+ + + GFFG+ +G + Q IT+++ ++ + ++
Sbjct: 242 MKKPEDMKGPFGVLSVGVGMVVVIYSFAGFFGFLTYGNDVQDSITLNL-PNDHLGIFVKA 300
Query: 303 KLILMLCVTFGVKFWVPFRLVW 238
L+ ++ F ++ + ++W
Sbjct: 301 VLLFVVYSGFLIQVFPIVAMIW 322
>U28928-4|AAA68337.2| 489|Caenorhabditis elegans Hypothetical
protein C44B7.6a protein.
Length = 489
Score = 70.1 bits (164), Expect = 2e-12
Identities = 49/202 (24%), Positives = 104/202 (51%), Gaps = 4/202 (1%)
Frame = -2
Query: 831 GTCCIYEIIIATTLKKVLEAVSPSLSHQELHLRIYVMITMVPLIAVCLIRNMRYLAPFSL 652
G CC + I + L ++LE V + + ++ M+ ++ V L +MR L+ SL
Sbjct: 181 GICCCFYIFVVYHLHELLEFVMNDVPSRAT---LFPMVLPAFILLVSL-SSMRALSLVSL 236
Query: 651 LADLFIGICMAIALYYGMSST-VPIRERPAWKNYGGLIRGSSIILYALSGITATLPVENN 475
+ + I +A+ ++ +++ + + P + G++ + ILYAL G LP+EN
Sbjct: 237 GGNFLMLIALAVIMFQLLTTEHKKLADLPPVTDLMGIVSAAGTILYALEGQAMVLPLENR 296
Query: 474 MERP---KLFFIVLQYGMSVVLCLVTVTGFFGYWGFGENCQGPITVHMGVSEVFPLILQF 304
M++P K F VL G+ +V+ + + GFFG+ +G + Q IT+++ ++ + ++
Sbjct: 297 MKKPEDMKGPFGVLSVGVGMVVVIYSFAGFFGFLTYGNDVQDSITLNL-PNDHLGIFVKA 355
Query: 303 KLILMLCVTFGVKFWVPFRLVW 238
L+ ++ F ++ + ++W
Sbjct: 356 VLLFVVYSGFLIQVFPIVAMIW 377
>AL031630-22|CAA20995.2| 454|Caenorhabditis elegans Hypothetical
protein Y38H6C.17 protein.
Length = 454
Score = 62.9 bits (146), Expect = 3e-10
Identities = 48/206 (23%), Positives = 103/206 (50%), Gaps = 6/206 (2%)
Frame = -2
Query: 732 IYVMITMVPLIAVCLIRNMRYLAPFSLLADLFIGICMAIALYYGMSST-VPIRERPAWKN 556
+ +++ VP + LI ++R + SL ++ I +A+ +S T P E P+
Sbjct: 171 VLILMYFVPQMLFNLIGHIRIITFLSLCGNVIIFAAIALITQELLSHTWYPTWELPSITG 230
Query: 555 YGGLIRGSSIILYALSGITATLPVENNMERP---KLFFIVLQYGMSVVLCLVTVTGFFGY 385
G+ + ++Y+ G LP+EN+++ P + VL M+VV+ GFFGY
Sbjct: 231 VEGVSLAAGSLIYSFEGQAMVLPLENSLKHPQDMRGLTGVLSTAMNVVIVFYAFLGFFGY 290
Query: 384 WGFGENCQGPITVHMGVSEVFPLILQFKLILMLCVTFGVKFWVPFRLVWYYLGKLHNRDR 205
FG + +G +T+++ + V + ++ L+L + + ++ ++ +++ L + +R
Sbjct: 291 IAFGPDVRGSLTLNL-PNSVLSVTVKGLLVLKVLLGNALQLFIIVQMLLPSLQAKVSENR 349
Query: 204 KLWERI--YMMFLIILITDGKLFVSV 133
KL +I Y + L +++ L ++V
Sbjct: 350 KLIHKILPYALRLSLMLVSLSLALAV 375
>Z97191-2|CAB10025.1| 481|Caenorhabditis elegans Hypothetical
protein H32K16.1 protein.
Length = 481
Score = 57.2 bits (132), Expect = 1e-08
Identities = 48/188 (25%), Positives = 89/188 (47%), Gaps = 6/188 (3%)
Frame = -2
Query: 732 IYVMITMVPLIAVCLIRNMRYLAPFSLLADLFIGICMAIALYYGMSST-VPIRERPAWKN 556
+ +++ VP + + I +M+ L L ++ I + + M T P E +
Sbjct: 199 VMILMYFVPQMLLNFIGHMKLLTILCLFGNVIIFAAIVLITKELMVHTWYPTWELGSVTG 258
Query: 555 YGGLIRGSSIILYALSGITATLPVENNMERPKLF---FIVLQYGMSVVLCLVTVTGFFGY 385
G+ + ++Y+ G LP+EN+++ PK VL M++V L GFFGY
Sbjct: 259 IEGISLAAGALIYSFEGQAMVLPMENSLKYPKDMTGATGVLSTAMNLVTVLYAFLGFFGY 318
Query: 384 WGFGENCQGPITVHMGVSEVFPLILQFKLILMLCVTFG--VKFWVPFRLVWYYLGKLHNR 211
FG QG +T+++ S L + K +L+L + FG ++ +V +++ L +
Sbjct: 319 VTFGPAVQGSLTLNLPNS---ILTVSIKGLLVLKIFFGSAIQLYVIVQMLLPSLRSKISE 375
Query: 210 DRKLWERI 187
DRK+ R+
Sbjct: 376 DRKMVHRL 383
>Z30423-12|CAA83006.2| 486|Caenorhabditis elegans Hypothetical
protein T20G5.6 protein.
Length = 486
Score = 34.7 bits (76), Expect = 0.084
Identities = 38/202 (18%), Positives = 86/202 (42%), Gaps = 2/202 (0%)
Frame = -2
Query: 840 QMCGTCCIYEIIIATTLKKVLEAVSPSLSHQELHLRIYVMITMVPLIAVCLIRNMRYLAP 661
++ TC IY ++ A +L++ PS+ ++MIT L+ + +++ ++
Sbjct: 176 ELLSTCIIYLVLAAD----LLQSCFPSVDKAG-----WMMITSASLLTCSFLDDLQIVSR 226
Query: 660 FSLLADLFIGICMAIALYYGMS--STVPIRERPAWKNYGGLIRGSSIILYALSGITATLP 487
S + I I + Y +S S N L ++++ +
Sbjct: 227 LSFFNAISHLIVNLIMVLYCLSFVSQWSFSTITFSLNINTLPTIVGMVVFGYTSHIFLPN 286
Query: 486 VENNMERPKLFFIVLQYGMSVVLCLVTVTGFFGYWGFGENCQGPITVHMGVSEVFPLILQ 307
+E NM+ P F ++L++ V G G+ FGE Q I+ + ++ F +++
Sbjct: 287 LEGNMKNPAQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEEISNSL-PNQSFKILVN 345
Query: 306 FKLILMLCVTFGVKFWVPFRLV 241
L++ +++ + F+ +L+
Sbjct: 346 LILVVKALLSYPLPFYAAVQLL 367
>AF031935-1|AAB87066.1| 486|Caenorhabditis elegans UNC-47 protein.
Length = 486
Score = 34.7 bits (76), Expect = 0.084
Identities = 38/202 (18%), Positives = 86/202 (42%), Gaps = 2/202 (0%)
Frame = -2
Query: 840 QMCGTCCIYEIIIATTLKKVLEAVSPSLSHQELHLRIYVMITMVPLIAVCLIRNMRYLAP 661
++ TC IY ++ A +L++ PS+ ++MIT L+ + +++ ++
Sbjct: 176 ELLSTCIIYLVLAAD----LLQSCFPSVDKAG-----WMMITSASLLTCSFLDDLQIVSR 226
Query: 660 FSLLADLFIGICMAIALYYGMS--STVPIRERPAWKNYGGLIRGSSIILYALSGITATLP 487
S + I I + Y +S S N L ++++ +
Sbjct: 227 LSFFNAISHLIVNLIMVLYCLSFVSQWSFSTITFSLNINTLPTIVGMVVFGYTSHIFLPN 286
Query: 486 VENNMERPKLFFIVLQYGMSVVLCLVTVTGFFGYWGFGENCQGPITVHMGVSEVFPLILQ 307
+E NM+ P F ++L++ V G G+ FGE Q I+ + ++ F +++
Sbjct: 287 LEGNMKNPAQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEEISNSL-PNQSFKILVN 345
Query: 306 FKLILMLCVTFGVKFWVPFRLV 241
L++ +++ + F+ +L+
Sbjct: 346 LILVVKALLSYPLPFYAAVQLL 367
>Z81077-6|CAB03069.1| 167|Caenorhabditis elegans Hypothetical
protein F36A2.7 protein.
Length = 167
Score = 31.9 bits (69), Expect = 0.59
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -2
Query: 330 EVFPLILQFKLILMLCVTFGVKFWVPFRLVWYYLGKLHNRDRKLWERI 187
E++PL F L+ + CV FG W F +L + H WERI
Sbjct: 81 EIYPL---FGLLAIWCVLFGYTVWYSFEKAEIWLDRSHTVAPWDWERI 125
>Z93389-1|CAB07668.1| 346|Caenorhabditis elegans Hypothetical
protein T13F3.1 protein.
Length = 346
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = -2
Query: 843 VQMCGTCCIYEIIIATTLKKVLEAVSPSLSHQELHLRIYVMITMVPLIAVCLIRNMRYLA 664
+ CGTCC Y+I + L ++ +L H++L + + T +P++ + L ++ ++
Sbjct: 219 IAYCGTCCYYKIQQQMRVAISLSKITKNL-HRQLFYALAIQ-TAIPMLLLHLPVSILFMF 276
Query: 663 P-FSLLADLFIG-ICMAIALY 607
P +F G + + IA Y
Sbjct: 277 PIMDSNLGIFTGFVTITIAAY 297
>AL021474-3|CAD54163.1| 519|Caenorhabditis elegans Hypothetical
protein Y32F6A.4 protein.
Length = 519
Score = 29.1 bits (62), Expect = 4.2
Identities = 23/159 (14%), Positives = 67/159 (42%), Gaps = 6/159 (3%)
Frame = -2
Query: 732 IYVMITMVPLIAVCLIRNMR---YLAPFSLLADLFIGICMAIALYYGMSSTVPIRERPAW 562
I ++I L+ +C +++ + + +++ I + + P + P +
Sbjct: 183 ILILIVATCLLPLCFLKSPQDFWWAVVIAMMTTSAAVILIIVGSIIDYGKCAPFAKLPPF 242
Query: 561 KNYGGLIRGSSIILYALSGITATLPVENNMERPKLFFIVLQYGMSVVLCLVTVTGFFGYW 382
+ L +L+++ G +A ++++M++PK F + +++ + GY
Sbjct: 243 RTTN-LFLSMGTLLFSVGGHSAFPTIQHDMKQPKEFTRSVFLAFTIMAFMYIPVCIMGYL 301
Query: 381 GFGENCQG---PITVHMGVSEVFPLILQFKLILMLCVTF 274
+G++ + P + + + +++ IL L + F
Sbjct: 302 VYGDSLRDSIIPSIQTVWIQQAINIMITVHCILTLTIVF 340
>Z81142-1|CAB03502.1| 334|Caenorhabditis elegans Hypothetical
protein ZK1037.3 protein.
Length = 334
Score = 28.3 bits (60), Expect = 7.3
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = -2
Query: 597 SSTVPIRERPAWKNYGGLIRGSSI-ILYALSGITATLPVENNMERPKLFFIVLQYGMSVV 421
S T +R RP W Y L G I +LY++ + N K F++ + + +
Sbjct: 35 SHTKGVR-RPFWGAYY-LASGLFILVLYSICFVAIARSKLMNTPAYKAMFVLGLFDIPSI 92
Query: 420 LCLVTVTGFFGYWGF 376
+TGF G++GF
Sbjct: 93 FTHSLITGFLGFYGF 107
>U41272-8|AAA82451.2| 243|Caenorhabditis elegans 2 (zwei) ig-domain
protein protein6 protein.
Length = 243
Score = 28.3 bits (60), Expect = 7.3
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Frame = -2
Query: 618 IALYYGMSSTVPIRERPA--WKNYGGLIRGSSIILYALSGITATLPVEN-NMERPKLFFI 448
I+L + T E+P WK +GGL R ++ + L T L + N ++E +++
Sbjct: 43 ISLVCSIKKTDSNGEKPGMIWKKHGGLDRTGNVEVKKLDDYTLGLIIRNSSVEDSGVYYC 102
Query: 447 VLQYGMSVVLCLVTVTGF 394
Q G V + + V F
Sbjct: 103 QAQVGSKVYMNKMDVIVF 120
>Z70037-3|CAC42352.1| 902|Caenorhabditis elegans Hypothetical
protein T27D12.2b protein.
Length = 902
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -1
Query: 475 YGKAKIILHCFAIRYVSGAVFGDSYRIFWVLGIR-*KLPGSYNSSHGSVGSIS 320
Y + I + CF I G +FG+ + W G+R P Y + VG+ S
Sbjct: 494 YIPSGIFVPCFVIGACGGRIFGEIISMIWPYGLRGLGQPQIYPGLYAVVGAAS 546
>Z70037-2|CAA93879.2| 906|Caenorhabditis elegans Hypothetical
protein T27D12.2a protein.
Length = 906
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -1
Query: 475 YGKAKIILHCFAIRYVSGAVFGDSYRIFWVLGIR-*KLPGSYNSSHGSVGSIS 320
Y + I + CF I G +FG+ + W G+R P Y + VG+ S
Sbjct: 494 YIPSGIFVPCFVIGACGGRIFGEIISMIWPYGLRGLGQPQIYPGLYAVVGAAS 546
>D84668-1|BAA86913.1| 902|Caenorhabditis elegans CLH-1 protein.
Length = 902
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -1
Query: 475 YGKAKIILHCFAIRYVSGAVFGDSYRIFWVLGIR-*KLPGSYNSSHGSVGSIS 320
Y + I + CF I G +FG+ + W G+R P Y + VG+ S
Sbjct: 494 YIPSGIFVPCFVIGACGGRIFGEIISMIWPYGLRGLGQPQIYPGLYAVVGAAS 546
>AF173170-1|AAF13163.1| 868|Caenorhabditis elegans CLC chloride
channel protein protein.
Length = 868
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -1
Query: 475 YGKAKIILHCFAIRYVSGAVFGDSYRIFWVLGIR-*KLPGSYNSSHGSVGSIS 320
Y + I + CF I G +FG+ + W G+R P Y + VG+ S
Sbjct: 456 YIPSGIFVPCFVIGACGGRIFGEIISMIWPYGLRGLGQPQIYPGLYAVVGAAS 508
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,467,618
Number of Sequences: 27780
Number of extensions: 455161
Number of successful extensions: 1095
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -