Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12e12
         (847 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   0.88 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   2.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   2.0  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    23   4.7  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   4.7  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   6.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   8.2  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   8.2  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.0 bits (52), Expect = 0.88
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 432 YRIAKQ*RIILAFPYCSQPVTW 497
           Y+IA++  I LA P+ + P TW
Sbjct: 499 YKIARREGIRLAAPFNASPTTW 520


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 241  NESERDPEFNTKSHAEH*NQLE 306
            +ESE DP+  T S  E  NQL+
Sbjct: 1783 DESESDPDQLTSSRTESSNQLD 1804


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 241  NESERDPEFNTKSHAEH*NQLE 306
            +ESE DP+  T S  E  NQL+
Sbjct: 1779 DESESDPDQLTSSRTESSNQLD 1800


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 165 LITDGKLFVSVDGHYISSF 109
           +IT  +L V+ DG+YI++F
Sbjct: 28  VITSQQLEVNFDGNYINNF 46


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -2

Query: 174 LIILITDGKLFVSVDGHYISS 112
           ++ ++ +GK+ VS DG Y+S+
Sbjct: 138 IVYVMEEGKVEVSRDGKYLST 158


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 732 SLDAVLDGLAKGKPLLKPF 788
           SL+ V +   KG PLL+P+
Sbjct: 95  SLNVVTNKKGKGGPLLRPY 113


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +1

Query: 232 IIPNESERDPEFNTKSHAEH*NQLEL*NQWKYFRHSHV 345
           IIP       EF    H +H +Q     +WK    SH+
Sbjct: 604 IIPKLQIALSEFVINPHQQHLDQWNWVYEWKELIPSHI 641


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -2

Query: 690 LIRNMRYLAPFSLLADLFIGICMAIALYYGM 598
           + R M +   F L    F+ +C+++  YY +
Sbjct: 110 MCRIMAFFRMFGLYLSSFVLVCISMDRYYAV 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 257,055
Number of Sequences: 438
Number of extensions: 6174
Number of successful extensions: 23
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)