Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12e11
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0306 + 22223514-22224095,22225426-22225638,22226310-222265...    29   3.0  
03_05_0840 + 28101420-28101779,28101878-28101991,28102131-281022...    28   7.0  
03_02_0236 + 6666104-6666202,6666530-6666832,6667476-6667550,666...    28   7.0  

>11_06_0306 +
           22223514-22224095,22225426-22225638,22226310-22226576,
           22227002-22227322
          Length = 460

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +3

Query: 282 RCFLQSVQCGRVTAIRENISEADSSLLSLLHMEYETVFLEK 404
           R +LQS     +TA +E +SEA S L S L++E +   L K
Sbjct: 231 RSYLQSAFTNLMTASKETVSEAVSKLKSRLNIESKVRTLTK 271


>03_05_0840 +
           28101420-28101779,28101878-28101991,28102131-28102229,
           28102800-28102874,28103311-28103378,28104015-28104087
          Length = 262

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +1

Query: 16  ANRRWLGTWLAAVQISFELTEFTILNKSQERAE*QQSIASHALVS 150
           + RRW+G W A V     L  F   NK +E  E  + +    L +
Sbjct: 56  SGRRWVGRWRAGVSSFSFLAPFFAGNKEKENREKAERLKEELLAT 100


>03_02_0236 +
           6666104-6666202,6666530-6666832,6667476-6667550,
           6668329-6668367,6668905-6668923,6669796-6669852,
           6670432-6670559,6670644-6670712,6671116-6671201,
           6671285-6671394,6672060-6672110,6672602-6672660,
           6672953-6672997,6673132-6673206,6673314-6673430
          Length = 443

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
 Frame = -1

Query: 562 HPDYANITIPNIDCYIPGMEFLCIVITSESAKLVET-GQEIGPVRARTCVPAKDFSKKTV 386
           +P Y +  IP  D  + GM++L   I + S K++E  G E   V     V +     K  
Sbjct: 206 YPSYKSNRIPTPDTIVQGMQYLKASIKAMSIKVIEVPGVEADDVIGTLAVSSVSAGYKVR 265

Query: 385 SYSMCSKLSKELSASEIFSRIA 320
             S      + LS S    RIA
Sbjct: 266 IVSPDKDFFQILSPSLRLLRIA 287


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,007,505
Number of Sequences: 37544
Number of extensions: 258178
Number of successful extensions: 735
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)