Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12e11
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110500-6|CAB60429.1|  629|Caenorhabditis elegans Hypothetical ...    29   4.7  
Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U97003-5|AAB52272.1|  353|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical...    28   8.3  

>AL110500-6|CAB60429.1|  629|Caenorhabditis elegans Hypothetical
           protein Y87G2A.6 protein.
          Length = 629

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 182 TKVFISECDADWNDRP*E*SGDVTR-LAVRRVRTQVLLAERAVRPR 316
           ++ FI+ C ADW D      G+VT  ++V +   QV   ER+ RPR
Sbjct: 573 SQFFITVCPADWLDGKNTLFGEVTAGMSVVQRINQVSTFERSGRPR 618


>Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical
           protein F40F8.11 protein.
          Length = 472

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 353 AVRLRDILSDSGDAAALHALQEAPVYGRGALL 258
           +  LR+ L +SGD   +HA     +YG G  +
Sbjct: 341 SAHLREALKESGDNILVHAFARDSIYGTGCTI 372


>U97003-5|AAB52272.1|  353|Caenorhabditis elegans Hypothetical
           protein F47C10.7 protein.
          Length = 353

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/29 (41%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = +3

Query: 288 FLQSVQCGRVTAIRE-NISEADSSLLSLL 371
           FL S+QCG V+ + E  ++E + ++LS+L
Sbjct: 236 FLNSIQCGLVSRVAELKVTELEHAMLSVL 264


>AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical
           protein W03F11.4 protein.
          Length = 1406

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 421 CVPAKDFSKKTVSYSMCSKLSKELSASEIFSRI 323
           C+P   FSK+T+ Y + S L+++L  S I  ++
Sbjct: 6   CIPHGTFSKQTIYYQLWSFLNRKLILSCIIMQL 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,489,081
Number of Sequences: 27780
Number of extensions: 213959
Number of successful extensions: 633
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)