Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12e09
         (777 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   3.2  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   3.2  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   3.2  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   4.2  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   9.7  

>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +3

Query: 12  FKYKYINASVILSTYEIEFNINQIYMLLLPI 104
           +KY Y N +   +  ++ +NIN I  + +P+
Sbjct: 96  YKYNYNNNNYNNNCKKLYYNINYIEQIPIPV 126


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +3

Query: 12  FKYKYINASVILSTYEIEFNINQIYMLLLPI 104
           +KY Y N +   +  ++ +NIN I  + +P+
Sbjct: 96  YKYNYNNNNYNNNCKKLYYNINYIEQIPIPV 126


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +3

Query: 12  FKYKYINASVILSTYEIEFNINQIYMLLLPI 104
           +KY Y N +   +  ++ +NIN I  + +P+
Sbjct: 96  YKYNYNNNNYNNNCKKLYYNINYIEQIPIPV 126


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +3

Query: 12  FKYKYINASVILSTYEIEFNINQIYMLLLPI 104
           +KY Y N +   +  ++ +NIN I  + +P+
Sbjct: 96  YKYNYNNNNYNNNCKKLYYNINYIEQIPVPV 126


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 543 YYQGVVQYISNIIYVKLFNVILDETR 620
           Y  GV  Y+S  +   L+N++ ++ R
Sbjct: 331 YMSGVFYYLSTTVNPLLYNIMSNKFR 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,866
Number of Sequences: 438
Number of extensions: 4061
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)