Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12e08
         (817 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    33   0.004
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    25   0.72 
AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    23   3.8  
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    23   3.8  
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    23   3.8  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    22   5.1  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    22   6.7  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 32.7 bits (71), Expect = 0.004
 Identities = 14/77 (18%), Positives = 37/77 (48%)
 Frame = +3

Query: 411 FVITIGYFDSSFYYGFEYRVFLLRNILYITSLFPLISFHYYFLFLSITQEFRNVLIIYFL 590
           F + + +    +Y+   + +F +  + Y   +  L  +++Y+ F+  T     ++ IY+ 
Sbjct: 202 FTLHLLFLPCIYYFYSAFIIFTIHLLFYCVLIILLCIYYFYYAFILFTVHLLLLVCIYYF 261

Query: 591 RSLHSILYRSGTLLFEM 641
             +H +L+    ++F M
Sbjct: 262 YYMH-LLFCCAFIIFTM 277



 Score = 28.7 bits (61), Expect = 0.058
 Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
 Frame = +3

Query: 399 VNVIFVITIGYFDSSFYYGFEYRVFLLRNIL-----YITSLFPLISFHYYFLFLSITQEF 563
           V+++F++  GYF     +   + +F +  +L     Y   +  L  +++Y+ F+  T   
Sbjct: 68  VHLLFLLCSGYFTVHLLFYCPFIIFTVHFLLCTYYFYYAFIILLCVYYFYYAFIIFTVHL 127

Query: 564 RNVLIIYF 587
             +L IY+
Sbjct: 128 LFLLCIYY 135



 Score = 27.1 bits (57), Expect = 0.18
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 408 IFVITIGYFDSSFYYGFEYRVFLLRNILYITSLFPLISFHYYF-LFLSITQEFRNVLIIY 584
           I ++ + YF  +F     + +FLL    ++  LF L+  +Y++  F+  T     +L IY
Sbjct: 108 IILLCVYYFYYAFIIFTVHLLFLLCIYYFVVPLFFLLCIYYFYCAFIIFTVHLLFLLCIY 167



 Score = 22.2 bits (45), Expect = 5.1
 Identities = 13/64 (20%), Positives = 30/64 (46%)
 Frame = +3

Query: 405 VIFVITIGYFDSSFYYGFEYRVFLLRNILYITSLFPLISFHYYFLFLSITQEFRNVLIIY 584
           ++F + +      +Y+ + + +F    I++   L  L+  +Y++  L I      + I Y
Sbjct: 246 ILFTVHLLLLVCIYYFYYMHLLFCCAFIIFTMHLLFLLCIYYFYCALIIL-----LCIYY 300

Query: 585 FLRS 596
           F R+
Sbjct: 301 FCRA 304


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 25.0 bits (52), Expect = 0.72
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 537 LFLSITQEFRNVLIIYFLRSLHSILYRSGTLL 632
           L +   +E R + I +FLRSL +I+   G LL
Sbjct: 122 LQIDTVREKRRIKIHFFLRSLFAIMLPLGILL 153


>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 200 YSVASVNIYFEGYDKMPHVIDPSKNL 123
           Y V +V +   GY++   +++ SKNL
Sbjct: 95  YVVTTVLVVLVGYERFDILLNKSKNL 120


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 200 YSVASVNIYFEGYDKMPHVIDPSKNL 123
           Y V +V +   GY++   +++ SKNL
Sbjct: 95  YVVTTVLVVLVGYERFDILLNKSKNL 120


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 200 YSVASVNIYFEGYDKMPHVIDPSKNL 123
           Y V +V +   GY++   +++ SKNL
Sbjct: 95  YVVTTVLVVLVGYERFDILLNKSKNL 120


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 13/57 (22%), Positives = 23/57 (40%)
 Frame = +3

Query: 375 KTWLKFREVNVIFVITIGYFDSSFYYGFEYRVFLLRNILYITSLFPLISFHYYFLFL 545
           K  + F     +F ITI    +   Y F  + + LR +L    +   I  H + + +
Sbjct: 24  KVLVTFAHFICLFPITINIRKNGLNYNFTKKCYFLRMVLIDLLIVGCILKHIFNILM 80


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 6/28 (21%), Positives = 16/28 (57%)
 Frame = -2

Query: 672 TKAKIRAAKSAFQIAKYQTCIKYCEEIL 589
           +K+  R  ++ F+I   +  ++YC  ++
Sbjct: 32  SKSHFRQGQAKFEITDLEPALQYCTHLI 59


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,695
Number of Sequences: 336
Number of extensions: 4289
Number of successful extensions: 19
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22310335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)