Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12e08
(817 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 55 1e-08
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces... 42 8e-05
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 42 1e-04
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch... 36 0.009
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 32 0.085
SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc... 31 0.20
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 31 0.26
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 29 0.60
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 27 2.4
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 4.2
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 27 4.2
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa... 27 4.2
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 27 4.2
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 26 5.6
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 26 5.6
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po... 26 5.6
SPBC530.09c |||cation dependent mannose-6-phosphate cargo recept... 26 7.4
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr... 26 7.4
SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces ... 25 9.7
SPAC13D6.03c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 25 9.7
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|... 25 9.7
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 9.7
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 54.8 bits (126), Expect = 1e-08
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Frame = -2
Query: 816 TEGIKQRCDNAEINASLYNNRAAAHWHLKNFRSALGDSEKALSFSSNHTKAKIRAAKSAF 637
T+ + Q+C + +I + Y+NRAA + +N+R L D + L S H KA R+AK+
Sbjct: 88 TKALAQKCGDKDIEIACYSNRAACNLLFENYRQVLNDCAQVLQRDSTHAKAYYRSAKALV 147
Query: 636 QIAKY---QTCIKYCEEILEN 583
+ +Y + CI+ C + N
Sbjct: 148 ALKRYDEAKECIRLCSLVHPN 168
Score = 44.0 bits (99), Expect = 3e-05
Identities = 41/139 (29%), Positives = 61/139 (43%), Gaps = 3/139 (2%)
Frame = -3
Query: 581 NDKDISELLSNAKKKKIIMERDQRKQARNIQNITEQKDAVLKAIIERGIKISNCDDEDDI 402
ND I L +KK E+ + ++ R Q VL A+ ER IK + D+
Sbjct: 168 NDPAILALSKELQKKSDDFEKRESEKKRVAQEKVIAAKTVLLALQERHIKTKTTEHPPDL 227
Query: 401 DLSKLEPSLPGAHDAIVHVEDGLLKWPVLFLYPEYQMTDFVRGCPEN-VPLSCQLEQLF- 228
+ + SL D L +P + LYP +DFV EN PL L+ +F
Sbjct: 228 GDAMI--SLSTFDDP-----KSELFFPTILLYPLVYQSDFVPSVSENCTPLEL-LKTVFQ 279
Query: 227 -PAPWDEKNKYSVASVNIY 174
PAPWD Y+ S++++
Sbjct: 280 SPAPWDVHQLYNPDSLDVF 298
>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 591
Score = 42.3 bits (95), Expect = 8e-05
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = -2
Query: 765 YNNRAAAHWHLKNFRSALGDSEKALSFSSNHTKAKIRAAKSAFQIAKYQTCIKYCEEILE 586
+ NRAAA+ + + D KA+ N KA +R A++ F + Y CI C E E
Sbjct: 436 FGNRAAAYLKVMAPAECIRDCNKAIELDPNFAKAYVRKAQALFMLKDYNKCIDACNEASE 495
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 783 EINASLYNNRAAAHWHLKNFRSALGDSEKALSFSSNHTK 667
E N LY+NR+A + K++ AL D+ K + K
Sbjct: 33 ERNHILYSNRSACYASEKDYADALKDATKCTELKPDWAK 71
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 41.9 bits (94), Expect = 1e-04
Identities = 24/77 (31%), Positives = 39/77 (50%)
Frame = -2
Query: 816 TEGIKQRCDNAEINASLYNNRAAAHWHLKNFRSALGDSEKALSFSSNHTKAKIRAAKSAF 637
+E ++ DN E A LY NRA LK AL DS+ AL+ S++ K AK+
Sbjct: 247 SEALQIDPDNKETVAKLYMNRATVLLRLKRPEEALSDSDNALAIDSSYLKGLKVRAKAHE 306
Query: 636 QIAKYQTCIKYCEEILE 586
+ K++ ++ + +E
Sbjct: 307 ALEKWEEAVRDVQSAIE 323
Score = 26.2 bits (55), Expect = 5.6
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = -2
Query: 816 TEGIKQRCDNAEINASLYNNRAAAHWHLKNFRSALGDSEKALSFSSN--HTKAKIRAAKS 643
TE I D+A A Y+NRAA + + F AL D++++ + T+++IR A
Sbjct: 47 TEAIDLGSDSAL--AIYYSNRAATYMQIGEFELALCDAKQSDRIKPDVPKTQSRIRQAYE 104
Query: 642 AFQI 631
I
Sbjct: 105 GLSI 108
>SPBC3F6.01c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 35.5 bits (78), Expect = 0.009
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -2
Query: 777 NASLYNNRAAAHWHLKNFRSALGDSEKALSFSSNHTKAKIRAAKSAFQI 631
NA LY+NR+ AH +++ A+ D+ KA+ + KA R A + I
Sbjct: 38 NAILYSNRSLAHLKSEDYGLAINDASKAIECDPEYAKAYFRRATAHIAI 86
Score = 27.9 bits (59), Expect = 1.8
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -2
Query: 774 ASLYNNRAAAHWHLKNFRSALGDSEKALSFSSNHTKA--KIRAAKSAFQIAKYQTCIKYC 601
A Y RA AH + + A+GD KAL+ + + A K+R + + ++Q I
Sbjct: 73 AKAYFRRATAHIAIFQPKEAVGDFRKALALAPSDPAARKKLRECEQLVKRIRFQEAIHNT 132
Query: 600 E 598
E
Sbjct: 133 E 133
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 32.3 bits (70), Expect = 0.085
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = -2
Query: 765 YNNRAAAHWHLKNFRSALGDSEKALSFSSNHTKAKIRAAKSAFQIAK 625
++NRAA + + +F + D+ +ALS S++ KA R + + Q+ K
Sbjct: 187 FSNRAACYAAIGDFEQVIKDTSEALSLDSSYVKALNRRSAAYEQLGK 233
>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 31.1 bits (67), Expect = 0.20
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -2
Query: 765 YNNRAAAHWHLKNFRSALGDSEKALSFSSNHTKAKIRAAKSAFQI 631
Y+NRAAA+ L F +A+ D+ LS +H +A R ++ +
Sbjct: 120 YSNRAAAYNQLGQFENAVEDALTCLSLDPHHARAFGRLGRAKLSL 164
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 30.7 bits (66), Expect = 0.26
Identities = 32/109 (29%), Positives = 45/109 (41%), Gaps = 15/109 (13%)
Frame = -3
Query: 587 KIN--DKDISELLSNAKKKKIIMERDQRKQARNIQNITEQKDAVLKAIIERGI----KIS 426
KIN D D+ +LLS+ KK K DQR + E+ L++ E + K+S
Sbjct: 270 KINATDADVKQLLSDVKKNKSKWANDQRIGQEELYEAAEKVVLELRSYTEHSLAFLTKVS 329
Query: 425 NCDDED-------DIDLSKLEPSLPGAH--DAIVHVEDGLLKWPVLFLY 306
D D +DL + +L H V D +L W FLY
Sbjct: 330 KRDAPDYYTVIKEPMDLGTILRNLKNLHYNSKKEFVHDLMLIWSNCFLY 378
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 29.5 bits (63), Expect = 0.60
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Frame = +3
Query: 339 IFHVYYSIVSSRKTWLKFREVNVIF-------VITIGYF-DSSFYYGFEYRVFLLRNILY 494
+F Y I+ + +KFR++ V+F +IT G+F +S + +RV+L +
Sbjct: 187 LFFPSYLILRKCNSSIKFRQIFVVFLFYLAGLIITSGFFLNSLSFLKIPFRVYLDSH--- 243
Query: 495 ITSLFPLISFHYYFLFLSITQEFRNVLIIYF 587
L P + +YF F + EFR + F
Sbjct: 244 --DLTPNLGLWWYF-FTEMFNEFRTFFLFVF 271
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -2
Query: 735 LKNFRSALGDSEKALSFSSNHTKAKI 658
+KN+ A+ S+KALSF +N+ A +
Sbjct: 15 VKNYELAIEQSKKALSFDANNYNANV 40
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 432 FDSSFYYGFEYRVFLLRNILYITSLFPLISFHYYFLFLSI 551
F SF + F + FL + + S FP++ F ++F FL +
Sbjct: 125 FFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFF-FLCV 163
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 26.6 bits (56), Expect = 4.2
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +3
Query: 372 RKTWLKFREVNVIFVITIGYFDSSFYYGFEYRVFLLRNILYITSLFPLI---SFHYYF 536
R+T+ V+++F++TI Y Y +FL+ +I Y ++ + SF+Y+F
Sbjct: 1271 RRTFTGLYIVHLLFLLTIFYPCPIAYTYVRNSIFLILSICYTINICVKVYGLSFYYFF 1328
>SPAC806.08c |mod21||gamma tubulin complex subunit
Mod21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 618
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 83 GTPAFFVLPRGSKIESR 33
G P+FF L GSKIE+R
Sbjct: 181 GYPSFFFLKNGSKIETR 197
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 91 NSKYFATSRSPKFFDGSMTCGILS*PSK*IFTLATLYLFF 210
NS+ +S +PK + S++CG L P+ +T A + +F
Sbjct: 784 NSRTLNSSFAPKILEDSISCGYLDQPAPQEYTNAPVTKWF 823
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 296 QMTDFVRGCPENVPLSCQLEQLFPAPWDEKNKY 198
+M +V+G PE +P C+ E FPA + E Y
Sbjct: 775 KMDAYVKGAPEIMPSICKPES-FPANYQEVLDY 806
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 26.2 bits (55), Expect = 5.6
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -3
Query: 569 ISELLSNAKKKKIIMERDQRKQARNIQNITEQKDAVLKAIIERGI-KISNCDDED 408
+S LS KKK+ + ++ +NI+ TE DA+ ++I I K++ +D D
Sbjct: 209 VSSALSKKKKKRNRKNQKKKSTKQNIEATTE-NDALSESISTPDIQKVAQSEDVD 262
>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 586
Score = 26.2 bits (55), Expect = 5.6
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 12/90 (13%)
Frame = -3
Query: 569 ISELLSNAKKKKIIMERDQRKQARNIQNITE-QKDAVLKAIIERGIKISNCD-------D 414
+ ELL+ K ++ER +R AR Q I E D +L E + ++N +
Sbjct: 354 VEELLTRKKSFLHLLERRERHAARLQQAIGEVDGDVILNRESEATLGVNNAQTSRSTIPE 413
Query: 413 EDDI--DLSKLEPSLP--GAHDAIVHVEDG 336
ED + D EPS+P G + + DG
Sbjct: 414 EDPLFNDEESKEPSVPLMGTDQPLENYHDG 443
>SPBC530.09c |||cation dependent mannose-6-phosphate cargo receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -1
Query: 283 SYVVALRMCRFLVSWSSYSQLRGTKKINTVLPV*IFI 173
+YV L C F W + KK +T+ PV +F+
Sbjct: 175 TYVGNLNDCAFFFEWKTIHACPTVKKDSTLNPVSVFL 211
>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 514
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 200 YSVASVNIYFEGYDKMPHVIDPSKNLGDLLVAKYFELRAGTP 75
Y + +++Y +G I P+ N GD+L A Y+ R G P
Sbjct: 247 YLYSYLSVYKQGKADDVRFIVPTGNFGDIL-AGYYAKRMGLP 287
>SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 246
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 209 KNKYSVASVNIYFEGYDKMPHVID 138
+NKY ASV I+ E Y + +D
Sbjct: 48 RNKYFEASVGIWIEEYSNLAETLD 71
>SPAC13D6.03c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 228
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = -3
Query: 203 KYSVASVNIYFEGYDKMPHVIDPSKNLGDLLVA 105
KY + N+Y G D+ ++ + NLG ++++
Sbjct: 54 KYQKVNPNVYMIGSDRCVKLVKIASNLGPMVIS 86
>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 272
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/43 (25%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Frame = -3
Query: 200 YSVASVNIYFEGYDKMPHVIDPS-----KNLGDLLVAKYFELR 87
Y + + ++ EG+ K PH+I + K + + L ++++EL+
Sbjct: 68 YHIMKITVFHEGFRKHPHLIGDTVLSFEKAMKEELQSEWYELK 110
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/56 (19%), Positives = 30/56 (53%)
Frame = -3
Query: 608 NTVKRS*KINDKDISELLSNAKKKKIIMERDQRKQARNIQNITEQKDAVLKAIIER 441
+++ ++ +N +++ + + K+K MER+ + + R + + E + L + ER
Sbjct: 939 SSMNQAVNMNFRELDKSIQEFKRKCQSMEREFKTELRKLDGVLEARSKRLSQLEER 994
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,381,173
Number of Sequences: 5004
Number of extensions: 72737
Number of successful extensions: 238
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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