Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12e08
         (817 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0706 + 24457148-24458031,24458621-24458822,24458896-244590...    42   4e-04
03_05_1142 - 30703333-30703469,30704058-30704205,30704893-307049...    40   0.003
01_01_1190 + 9463973-9465732,9466210-9466440,9467664-9467793,946...    38   0.007
05_07_0294 - 29038259-29038420,29038526-29038632,29038889-290390...    37   0.022
02_05_0780 - 31705605-31705754,31705858-31706191,31706306-317064...    36   0.029
12_01_0856 + 8034181-8035425                                           33   0.21 
12_02_1034 - 25562214-25562280,25562661-25562794,25562990-255631...    33   0.36 
10_08_0571 - 18855317-18855541,18855667-18855747,18855849-188559...    33   0.36 
03_05_0859 - 28329837-28329919,28330062-28330131,28330498-283305...    32   0.47 
10_08_0435 + 17905728-17905901,17906608-17906931,17907205-179073...    31   0.83 
07_03_0846 - 21983581-21986055                                         31   0.83 
02_05_0788 + 31758119-31758384,31758482-31758634,31759385-317595...    31   0.83 
06_01_0422 + 3034556-3034777,3034859-3035138,3036398-3036483,303...    31   1.1  
04_04_0330 + 24456200-24456261,24456385-24456520,24457100-244571...    30   2.5  
11_06_0210 + 21296782-21296909,21297135-21298844,21299127-212994...    29   3.3  
10_08_1038 - 22485394-22485960,22486712-22487197                       29   4.4  
07_01_0559 + 4151054-4151178,4151306-4153018,4153121-4153412,415...    29   4.4  
04_04_0639 + 26883810-26883821,26884131-26884307,26885276-268853...    29   4.4  
02_03_0294 - 17378157-17378208,17378433-17378512,17378594-173787...    29   4.4  
01_06_1127 - 34699119-34699360,34699446-34699689,34699773-346998...    29   4.4  
03_02_0406 + 8182870-8184262,8184376-8184452,8184809-8184920,818...    29   5.8  
04_04_0794 + 28104725-28104829,28105721-28105762,28106470-281065...    28   7.7  

>01_05_0706 +
           24457148-24458031,24458621-24458822,24458896-24459080,
           24459170-24459503,24459614-24459818,24460022-24460128,
           24460220-24460381
          Length = 692

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 20/57 (35%), Positives = 32/57 (56%)
 Frame = -2

Query: 777 NASLYNNRAAAHWHLKNFRSALGDSEKALSFSSNHTKAKIRAAKSAFQIAKYQTCIK 607
           N  LY NRAA    L+ +  A+ D  +AL    N+TKA +R A S  ++ ++  C++
Sbjct: 488 NPVLYCNRAACWGKLERWEKAVDDCNEALRIQPNYTKALLRRASSYAKLERWADCVR 544


>03_05_1142 -
           30703333-30703469,30704058-30704205,30704893-30704963,
           30705189-30705285,30705371-30705562,30705639-30705977
          Length = 327

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 21/61 (34%), Positives = 32/61 (52%)
 Frame = -2

Query: 768 LYNNRAAAHWHLKNFRSALGDSEKALSFSSNHTKAKIRAAKSAFQIAKYQTCIKYCEEIL 589
           L+ NRA  +  L N R AL D+ +A+  S ++ KA  RAAK+A  +        +C   +
Sbjct: 80  LFANRAHVNLLLGNHRRALDDAARAVQLSPSNVKAYYRAAKAAIALGLLPEAAAFCRRGI 139

Query: 588 E 586
           E
Sbjct: 140 E 140


>01_01_1190 +
           9463973-9465732,9466210-9466440,9467664-9467793,
           9468723-9468888,9469528-9469859,9470284-9470513,
           9471535-9471613,9471689-9471865
          Length = 1034

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 22/61 (36%), Positives = 29/61 (47%)
 Frame = -2

Query: 765 YNNRAAAHWHLKNFRSALGDSEKALSFSSNHTKAKIRAAKSAFQIAKYQTCIKYCEEILE 586
           Y+NRAA    L   R AL D  KA    S+  KA+IRAA     +   +   K  E  L+
Sbjct: 625 YSNRAATRMSLGRMREALSDCRKATDIDSSFLKAQIRAANCLLALGDVEEAQKGFEICLK 684

Query: 585 N 583
           +
Sbjct: 685 S 685



 Score = 31.5 bits (68), Expect = 0.83
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = -2

Query: 816 TEGIKQRCDNAEINASLYNNRAAAHWHLKNFRSALGDSEKALSFSSNHTKAKIRAA 649
           T  +    ++   +A  + NRAAA+  +     A+ D   A++  SN++KA  R A
Sbjct: 824 TAALLSNTESPRFSAICFANRAAAYQAMGQILDAIADCSLAIALDSNYSKAISRRA 879


>05_07_0294 -
           29038259-29038420,29038526-29038632,29038889-29039093,
           29039173-29039536,29039588-29039772,29039879-29040080,
           29040697-29041589
          Length = 705

 Score = 36.7 bits (81), Expect = 0.022
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = -2

Query: 777 NASLYNNRAAAHWHLKNFRSALGDSEKALSFSSNHTKAKIRAAKSAFQIAKYQTCIK 607
           N  LY NRAA    L  +  A+ D  +AL     +TKA +R A S  ++ ++  C++
Sbjct: 501 NPVLYCNRAACWSKLGRWMKAVEDCNEALKVHPGYTKALLRRAASYAKLERWADCVR 557


>02_05_0780 -
           31705605-31705754,31705858-31706191,31706306-31706478,
           31706615-31706810,31707864-31708777
          Length = 588

 Score = 36.3 bits (80), Expect = 0.029
 Identities = 17/64 (26%), Positives = 35/64 (54%)
 Frame = -2

Query: 777 NASLYNNRAAAHWHLKNFRSALGDSEKALSFSSNHTKAKIRAAKSAFQIAKYQTCIKYCE 598
           NA L  NRAA H  L  +  A+ D   AL+    ++KA++R A    ++ +++  ++  +
Sbjct: 492 NAVLLCNRAACHARLARYEKAVEDCNGALAMRPAYSKARLRRADCNVKLERWEASLRDYQ 551

Query: 597 EILE 586
            +++
Sbjct: 552 VLIQ 555


>12_01_0856 + 8034181-8035425
          Length = 414

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 20/66 (30%), Positives = 34/66 (51%)
 Frame = -3

Query: 572 DISELLSNAKKKKIIMERDQRKQARNIQNITEQKDAVLKAIIERGIKISNCDDEDDIDLS 393
           D   LL N +K +  ++   +KQA   + IT+ KDAV  A+    ++ S+ D+   +   
Sbjct: 93  DFDRLLHNCQKTEEQLQSLPKKQADQYKRITKLKDAVRSALDLLQLQKSSIDEGMKVKFC 152

Query: 392 KLEPSL 375
           K E S+
Sbjct: 153 KYESSI 158


>12_02_1034 -
           25562214-25562280,25562661-25562794,25562990-25563109,
           25563331-25563510,25563847-25564020,25564466-25564639,
           25564734-25564827,25566088-25566242
          Length = 365

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -2

Query: 777 NASLYNNRAAAHWHLKNFRSALGDSEKALSFSSNHTKAKIR 655
           N +LY+NRAAA  HL     AL D++  +       K   R
Sbjct: 47  NPTLYSNRAAAFLHLVKLNKALADADTTIKLKPQWEKGHFR 87


>10_08_0571 -
           18855317-18855541,18855667-18855747,18855849-18855963,
           18856061-18856224,18856307-18856540,18856626-18856781,
           18857113-18857244,18857850-18857984,18858071-18858457,
           18858708-18858826,18858914-18859124,18859268-18859339,
           18859542-18859628,18859993-18860127,18860240-18860368
          Length = 793

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 21/67 (31%), Positives = 30/67 (44%)
 Frame = -2

Query: 789 NAEINASLYNNRAAAHWHLKNFRSALGDSEKALSFSSNHTKAKIRAAKSAFQIAKYQTCI 610
           +A + A+LY NRA+    L      L D ++A+S S N+ KA  R          Y + I
Sbjct: 101 DASLIATLYVNRASTMHKLGLLEECLRDCDRAISVSPNYAKAWYRRGMVNASFRNYSSSI 160

Query: 609 KYCEEIL 589
              E  L
Sbjct: 161 HDLEVAL 167


>03_05_0859 -
           28329837-28329919,28330062-28330131,28330498-28330549,
           28330671-28330798,28331283-28331483,28332183-28332317,
           28333116-28333275,28333824-28334019,28334070-28334252,
           28334382-28334507,28335090-28335214,28335389-28335541,
           28337267-28337472
          Length = 605

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -2

Query: 774 ASLYNNRAAAHWHLKNFRSALGDSEKALSFSSNHTKAKIRAAKSAFQIAKYQTCI 610
           A+ Y+NRAAA   L ++R A  D   A+       KA +R   +   +  Y+  +
Sbjct: 523 ATYYSNRAAAFLELASYRQAEADCTSAIDIDPKIVKAYLRRGTAREMLGYYKEAV 577


>10_08_0435 +
           17905728-17905901,17906608-17906931,17907205-17907321,
           17908418-17908597,17909064-17909190,17909327-17909440,
           17909794-17909909
          Length = 383

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 15/66 (22%), Positives = 34/66 (51%)
 Frame = -2

Query: 783 EINASLYNNRAAAHWHLKNFRSALGDSEKALSFSSNHTKAKIRAAKSAFQIAKYQTCIKY 604
           +I ++ ++NRA     L  +   + +  KAL  + ++ KA +R  ++  ++  Y   I  
Sbjct: 249 DIRSACHSNRAVCFLKLGKYDETIKECTKALELNPSYLKALLRRGEAHEKLEHYDEAIAD 308

Query: 603 CEEILE 586
            ++I+E
Sbjct: 309 MKKIIE 314


>07_03_0846 - 21983581-21986055
          Length = 824

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 302 EYQMTDFVRGCPENVPLSCQLEQLFPAPWDEKNKYSVASVNI 177
           ++ + DF  GC  NVPL CQ          +K  YS+ SV +
Sbjct: 324 DWDLQDFTGGCKRNVPLQCQTNSSSAQTQPDK-FYSMVSVRL 364


>02_05_0788 +
           31758119-31758384,31758482-31758634,31759385-31759509,
           31759650-31759678,31760943-31761008,31761059-31761125,
           31761226-31761370,31761404-31761451,31762014-31762182,
           31762645-31762779,31762858-31763064,31763608-31763735,
           31763815-31763866,31764046-31764060,31764502-31764609
          Length = 570

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -2

Query: 777 NASLYNNRAAAHWHLKNFRSALGDSEKAL 691
           NA+ Y+NRAAA+  L  ++ A  D E+AL
Sbjct: 497 NATYYSNRAAAYLELGRYKQAEADCEQAL 525


>06_01_0422 +
           3034556-3034777,3034859-3035138,3036398-3036483,
           3036614-3036837,3036911-3036971,3037634-3037828,
           3037981-3038205
          Length = 430

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = -2

Query: 726 FRSALGDSEKALSFSSNHTKAKIRAAKSAFQIAKYQTCIKYCEEILE 586
           ++ A+    +A +         I+ AKS F + +Y+ C++ C+E +E
Sbjct: 41  YKRAVEHYARAAALDPGDISFPIKCAKSYFHMDQYEECVRRCDEAVE 87


>04_04_0330 +
           24456200-24456261,24456385-24456520,24457100-24457165,
           24457260-24457310,24457399-24457455,24457742-24457827,
           24458207-24458216,24458385-24458450,24458744-24458784,
           24460050-24460182,24460857-24461045,24461145-24461219,
           24462228-24462358,24463155-24463229,24463385-24463562
          Length = 451

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 302 EYQMTDFVRGCPENVPLSCQLEQLFPAPWDEKNKY 198
           +Y +  FV G     P S  +   FPA W+ +NKY
Sbjct: 159 DYLIDPFVAGTSGGDPESLSIRHAFPALWNLENKY 193


>11_06_0210 +
           21296782-21296909,21297135-21298844,21299127-21299418,
           21300210-21300519,21300890-21301110
          Length = 886

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -2

Query: 771 SLYNNRAAAHWHLKNFRSALGDSEKALSFSSNH 673
           +L + RAA H H+ +  SAL D   ALS   NH
Sbjct: 839 NLLHLRAAFHEHVGDISSALRDCRAALSVDPNH 871


>10_08_1038 - 22485394-22485960,22486712-22487197
          Length = 350

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
 Frame = -3

Query: 518 DQRKQARNIQNITEQKD--AVLKAIIERGIKISNCDDEDDIDLSKLEPSLPGAHDAIVHV 345
           DQ  +    + +TE  D       + E   K+S  DDE++ D     P+  G H   ++ 
Sbjct: 248 DQDPEEEEEEWLTEDDDDDECFDDLCEGMSKMSVFDDEEEEDKKAGLPAFQGKHTRFIYD 307

Query: 344 EDGLLKWPVLFLYPEYQMTDFVRGCP 267
            DG ++   +   P    T  +RG P
Sbjct: 308 SDGEMEREDVAHVPVENCTMVLRGLP 333


>07_01_0559 +
           4151054-4151178,4151306-4153018,4153121-4153412,
           4154327-4154636,4155041-4155261
          Length = 886

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -2

Query: 768 LYNNRAAAHWHLKNFRSALGDSEKALSFSSNH 673
           L + RAA H H+ +  SAL D   ALS   NH
Sbjct: 840 LLHLRAAFHEHIGDVPSALRDCRAALSLDPNH 871


>04_04_0639 +
           26883810-26883821,26884131-26884307,26885276-26885339,
           26886614-26887734,26888193-26888481,26888528-26888658,
           26888910-26889133,26889220-26889286,26889744-26889803,
           26889896-26889979,26890290-26890301
          Length = 746

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -2

Query: 777 NASLYNNRAAAHWHLKNFRSALGDSEKALSFSSNHTK 667
           N  LY+NR+AA+  L  +  AL D+E+ ++   +  K
Sbjct: 198 NHVLYSNRSAAYASLHRYPEALADAERTVALRPDWAK 234



 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = -2

Query: 768 LYNNRAAAHWHLKNFRSALGDSEKALSFSSNHTKAKIRAAKSAFQIAKYQTCIK 607
           +Y+NRAA +  L      L D+EK +      +K   R     F + +Y   ++
Sbjct: 599 VYSNRAACYTKLGAMPEGLKDAEKCIELDPTFSKGYTRKGAIQFFMKEYDKALE 652


>02_03_0294 -
           17378157-17378208,17378433-17378512,17378594-17378764,
           17379836-17379940,17381251-17381307
          Length = 154

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = -2

Query: 777 NASLYNNRAAAHWHLKNFRSALGDSEKALSFSSNHTKAKIRAAKSAFQIAKYQTCIKYCE 598
           +A+LY+NR+    H+ +   A GD+        +  KA  R   +   + +YQ   K C+
Sbjct: 62  DATLYSNRSLCFLHMGDGDKAYGDAYTCRMMRPDWPKACYRQGAALMLLKEYQ---KACD 118

Query: 597 EILE 586
            +L+
Sbjct: 119 ALLD 122


>01_06_1127 - 34699119-34699360,34699446-34699689,34699773-34699844,
            34700123-34700218,34700322-34700438,34700520-34700676,
            34700770-34700867,34700940-34701098,34701169-34701339,
            34701402-34701479,34701548-34701667,34701968-34702085,
            34702216-34702346,34702452-34702528,34702858-34702969,
            34703057-34703239,34703416-34703517,34703617-34703718,
            34703817-34703912,34704481-34704558,34704652-34704744,
            34704817-34704938,34705035-34705116,34705204-34705278,
            34705385-34705645,34705730-34705854,34705956-34706031,
            34706128-34706277,34706359-34706454,34706707-34706814,
            34706956-34707056,34707727-34707814,34707894-34708006,
            34708278-34708383,34709143-34709247,34709356-34709427,
            34709931-34709971,34710067-34710175,34710252-34710317,
            34710404-34710540,34710788-34710890,34711416-34711535,
            34711707-34711820,34711923-34712008,34712088-34712170,
            34713283-34713347,34713444-34713621,34713697-34713776,
            34714926-34715049,34715140-34715245,34715399-34715561
          Length = 1966

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 20/88 (22%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
 Frame = -3

Query: 572  DISELLSNAKKKKIIMERDQRKQARNIQNITEQKDAVLKAIIER-GIKISNCDDEDDID- 399
            +I +     +++++++ + + ++ R  Q I E K  + +   E   +++ N D +  ID 
Sbjct: 1110 NIKDSNKEERERRVLVRKFKFEEPRREQ-IDELKIELFRHFREDVSLRLWNSDFKRQIDG 1168

Query: 398  LSKLEPSLPGAHDAIVHVEDGLLKWPVL 315
            +  L+ +LP +   ++ + D LL+W VL
Sbjct: 1169 IELLQKALPSSRKEVIELLDILLRWFVL 1196


>03_02_0406 +
           8182870-8184262,8184376-8184452,8184809-8184920,
           8185064-8185071,8185633-8186217
          Length = 724

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 323 PVLFLYPEYQMTDFVRGCPENVPLSCQL 240
           P L L P   +T     C +N+PLSC L
Sbjct: 434 PSLVLIPTNLLTHSSSNCADNIPLSCDL 461


>04_04_0794 +
           28104725-28104829,28105721-28105762,28106470-28106544,
           28106811-28106950,28107036-28107093,28107239-28107241,
           28107740-28107849,28108562-28108648,28108773-28108856,
           28109212-28109277,28109377-28109488,28109949-28110149
          Length = 360

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
 Frame = +3

Query: 381 WLKFREVNVIFVITIGYFDSSFYYGFEYR--------VFLLRNILYITSLFPLISFHYYF 536
           W    E  V+ V T+ ++   FY G            V L+  IL +  L PL+ FH Y 
Sbjct: 178 WWYIFEQTVLTVWTVAFYIQFFYLGIVVSWWKFAIGIVLLVALILILVVLLPLLIFHAYL 237

Query: 537 -LFLSITQEFRNVLIIYFLRSLHS 605
            L    T E      I +LR + S
Sbjct: 238 ALTNQTTYEIARRKRISYLREVPS 261


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,844,209
Number of Sequences: 37544
Number of extensions: 432482
Number of successful extensions: 1214
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)