Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12e08
(817 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28739-8|AAB93452.2| 419|Caenorhabditis elegans Hypothetical pr... 64 1e-10
M98552-9|AAA28210.3| 569|Caenorhabditis elegans Hypothetical pr... 38 0.009
AF016422-4|AAG24172.1| 320|Caenorhabditis elegans Hypothetical ... 35 0.061
U29096-3|AAA68407.1| 961|Caenorhabditis elegans Uncoordinated p... 33 0.32
AF034085-1|AAD01976.1| 961|Caenorhabditis elegans UNC-45 protein. 33 0.32
AL132948-2|CAC51076.2| 496|Caenorhabditis elegans Hypothetical ... 32 0.43
AL021487-8|CAB76733.1| 320|Caenorhabditis elegans Hypothetical ... 32 0.43
Z66512-3|CAA91325.1| 179|Caenorhabditis elegans Hypothetical pr... 30 2.3
U00049-3|AAC47059.1| 339|Caenorhabditis elegans Serpentine rece... 30 2.3
L23651-10|AAM22041.1| 821|Caenorhabditis elegans Kleisin (abnor... 29 3.0
AY028167-1|AAK19023.1| 287|Caenorhabditis elegans EFL-2 protein. 29 3.0
AL117203-19|CAN86631.1| 358|Caenorhabditis elegans Hypothetical... 29 3.0
AL117203-18|CAN86630.1| 332|Caenorhabditis elegans Hypothetical... 29 3.0
AL117203-17|CAN86629.1| 284|Caenorhabditis elegans Hypothetical... 29 3.0
AL117203-16|CAB60421.1| 412|Caenorhabditis elegans Hypothetical... 29 3.0
AF024502-6|AAB70378.4| 402|Caenorhabditis elegans Hypothetical ... 29 3.0
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z93374-4|CAB07556.1| 834|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z81037-1|CAB02745.1| 819|Caenorhabditis elegans Hypothetical pr... 28 9.2
U61944-4|AAB03120.1| 891|Caenorhabditis elegans Hypothetical pr... 28 9.2
AC024765-8|AAF60530.1| 165|Caenorhabditis elegans Hypothetical ... 28 9.2
>U28739-8|AAB93452.2| 419|Caenorhabditis elegans Hypothetical
protein C17G10.2 protein.
Length = 419
Score = 64.1 bits (149), Expect = 1e-10
Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 8/165 (4%)
Frame = -3
Query: 524 ERDQRKQARNIQNITEQKDAVLKAIIERGIKISN---CDDEDDIDLSKLEPSLP--GAHD 360
ERD+RK + TE K +L A+ ER + + D + +D+++L SLP +H+
Sbjct: 235 ERDKRKSRAEERKETESKKQLLDALKERNLNLCPRVPFDRPELMDMARLTVSLPLMHSHE 294
Query: 359 AIVHVEDGLLKWPVLFLYPEYQMTDFVRGCPENVPLSCQLEQLF--PAPWDEKNKYSVAS 186
+ +D L WP+L YPE TD + E + L+++ PA WD ++K++ +
Sbjct: 295 CVKFDDDLNLVWPILLQYPEAGQTDVLTETNELTTVGELLKEVLNSPAQWDPEHKFNFEN 354
Query: 185 VNIYF-EGYDKMPHVIDPSKNLGDLLVAKYFELRAGTPAFFVLPR 54
V + + YD+ + + +L ++++ G P ++ +
Sbjct: 355 VRFFVSDEYDEYLMEVYEWNDFKSVLSMPGYQIKQGLPVIMIMTK 399
Score = 52.4 bits (120), Expect = 4e-07
Identities = 26/73 (35%), Positives = 38/73 (52%)
Frame = -2
Query: 816 TEGIKQRCDNAEINASLYNNRAAAHWHLKNFRSALGDSEKALSFSSNHTKAKIRAAKSAF 637
+ GIK+ + ++NA LY NRAAA HL N RSA+ D F H K IR A+
Sbjct: 119 SNGIKENSPDRKLNAVLYFNRAAAQKHLGNLRSAIKDCSMGRKFDPTHLKGVIRGAECLL 178
Query: 636 QIAKYQTCIKYCE 598
++ + + + E
Sbjct: 179 ELEYAKDALNWIE 191
>M98552-9|AAA28210.3| 569|Caenorhabditis elegans Hypothetical
protein ZK370.8 protein.
Length = 569
Score = 37.9 bits (84), Expect = 0.009
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Frame = -2
Query: 816 TEGIKQRCDNA--EINASLYNNRAAAHWHLKNFR-SALGDSEKALSFSSNHTKAKIRAAK 646
T+G+++ N+ +I A LY NRAA + + L D AL +TKA +RAAK
Sbjct: 68 TKGVEKAGPNSSDQIVAMLYQNRAACREKVGHSPFDILNDCMAALKVDKKYTKAYLRAAK 127
Query: 645 SAFQIAKYQTCIKY 604
+ + K Q + Y
Sbjct: 128 ALNDVGKKQDALAY 141
>AF016422-4|AAG24172.1| 320|Caenorhabditis elegans Hypothetical
protein R09E12.3 protein.
Length = 320
Score = 35.1 bits (77), Expect = 0.061
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = -2
Query: 777 NASLYNNRAAAHWHLKNFRSALGDSEKALSFSSNHTKAKIRAAKSAFQIAKYQTCIKYCE 598
NA LY+NRAA L F+ AL D + + S K IR A + ++ + E
Sbjct: 173 NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYE 232
Query: 597 EILE 586
+ L+
Sbjct: 233 DALQ 236
>U29096-3|AAA68407.1| 961|Caenorhabditis elegans Uncoordinated
protein 45 protein.
Length = 961
Score = 32.7 bits (71), Expect = 0.32
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = -2
Query: 816 TEGIKQRCDNAE-INASLYNNRAAAHWHLKNFRSALGDSEKALSFSSNHTKAKIRAAKSA 640
TE ++ D + + LY NRA A +F A D KAL F KA R + +
Sbjct: 32 TEALQLTTDEDKALRPVLYRNRAMARLKRDDFEGAQSDCTKALEFDGADVKALFRRSLAR 91
Query: 639 FQIAKYQTCIKYCEEIL 589
Q+ + +E L
Sbjct: 92 EQLGNVGPAFQDAKEAL 108
>AF034085-1|AAD01976.1| 961|Caenorhabditis elegans UNC-45 protein.
Length = 961
Score = 32.7 bits (71), Expect = 0.32
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = -2
Query: 816 TEGIKQRCDNAE-INASLYNNRAAAHWHLKNFRSALGDSEKALSFSSNHTKAKIRAAKSA 640
TE ++ D + + LY NRA A +F A D KAL F KA R + +
Sbjct: 32 TEALQLTTDEDKALRPVLYRNRAMARLKRDDFEGAQSDCTKALEFDGADVKALFRRSLAR 91
Query: 639 FQIAKYQTCIKYCEEIL 589
Q+ + +E L
Sbjct: 92 EQLGNVGPAFQDAKEAL 108
>AL132948-2|CAC51076.2| 496|Caenorhabditis elegans Hypothetical
protein Y39B6A.2 protein.
Length = 496
Score = 32.3 bits (70), Expect = 0.43
Identities = 15/55 (27%), Positives = 30/55 (54%)
Frame = -2
Query: 774 ASLYNNRAAAHWHLKNFRSALGDSEKALSFSSNHTKAKIRAAKSAFQIAKYQTCI 610
A LY NRA A+ + + SAL D++ A++ ++ K R A + + +++ +
Sbjct: 62 AVLYGNRAQAYLKKELYGSALEDADNAIAIDPSYVKGFYRRATANMALGRFKKAL 116
>AL021487-8|CAB76733.1| 320|Caenorhabditis elegans Hypothetical
protein Y45F10B.14 protein.
Length = 320
Score = 32.3 bits (70), Expect = 0.43
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Frame = +3
Query: 420 TIGYFDSSFYYGFEYRV-FLLRNIL---YITSLFPLI-SFHY-YFLFLSITQEFRNVLII 581
TIGY + F F YRV F N++ + S + L+ SF Y Y++ + + VLI+
Sbjct: 71 TIGYISNGFCKYFGYRVCFFSHNLMAHFIVHSNYSLVLSFAYRYYILRKPEPQRKTVLIV 130
Query: 582 YFLRSLHSIL 611
FL L S L
Sbjct: 131 LFLTYLPSFL 140
>Z66512-3|CAA91325.1| 179|Caenorhabditis elegans Hypothetical
protein F52H3.5 protein.
Length = 179
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -2
Query: 777 NASLYNNRAAAHWHLKNFRSALGDSEKALSFSSNHTKAKIRA 652
N S YNNRA A+ AL D +ALS + TK +A
Sbjct: 76 NPSAYNNRAQAYRLQNKPEKALDDLNEALSLAGPKTKTACQA 117
>U00049-3|AAC47059.1| 339|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 7 protein.
Length = 339
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = +3
Query: 402 NVIFVITIGYFDS---SFYYGFEYRVFLLRNIL-YITSLFPLISFHYYFLFLSITQEFRN 569
N IF+I +F + SFY F Y + R ++ + ++ +++ Y +FL+ +EFRN
Sbjct: 238 NSIFIIVAFFFQAAFQSFYAFFRYTDWYPRFLVDFQFIIYDVMTVGYPLIFLNFAKEFRN 297
>L23651-10|AAM22041.1| 821|Caenorhabditis elegans Kleisin (abnormal
closure) familyprotein 2 protein.
Length = 821
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -3
Query: 254 LSCQLEQLFPAPWDEKNKYSVASVNIYFEGYDKMPHVIDPSKNL 123
LS + E+ PAPWDE +K + I++ G + +P V P K +
Sbjct: 429 LSRRDEKRAPAPWDELDKNHI----IWYTGDENLPVVSKPVKKI 468
>AY028167-1|AAK19023.1| 287|Caenorhabditis elegans EFL-2 protein.
Length = 287
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -3
Query: 428 SNCDDEDDIDLSKLEPSLPGAHDAIVHVEDGLLKWPVLFLY--PEY 297
S D ++ +PS G+HD IV ++G+ +LF PEY
Sbjct: 173 SELDTSSSFEIQVTDPSTSGSHDMIVRNKNGVKSHALLFTNDPPEY 218
>AL117203-19|CAN86631.1| 358|Caenorhabditis elegans Hypothetical
protein Y48C3A.17d protein.
Length = 358
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -3
Query: 428 SNCDDEDDIDLSKLEPSLPGAHDAIVHVEDGLLKWPVLFLY--PEY 297
S D ++ +PS G+HD IV ++G+ +LF PEY
Sbjct: 170 SELDTSSSFEIQVTDPSTSGSHDMIVRNKNGVKSHALLFTNDPPEY 215
>AL117203-18|CAN86630.1| 332|Caenorhabditis elegans Hypothetical
protein Y48C3A.17c protein.
Length = 332
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -3
Query: 428 SNCDDEDDIDLSKLEPSLPGAHDAIVHVEDGLLKWPVLFLY--PEY 297
S D ++ +PS G+HD IV ++G+ +LF PEY
Sbjct: 170 SELDTSSSFEIQVTDPSTSGSHDMIVRNKNGVKSHALLFTNDPPEY 215
>AL117203-17|CAN86629.1| 284|Caenorhabditis elegans Hypothetical
protein Y48C3A.17b protein.
Length = 284
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -3
Query: 428 SNCDDEDDIDLSKLEPSLPGAHDAIVHVEDGLLKWPVLFLY--PEY 297
S D ++ +PS G+HD IV ++G+ +LF PEY
Sbjct: 170 SELDTSSSFEIQVTDPSTSGSHDMIVRNKNGVKSHALLFTNDPPEY 215
>AL117203-16|CAB60421.1| 412|Caenorhabditis elegans Hypothetical
protein Y48C3A.17a protein.
Length = 412
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -3
Query: 428 SNCDDEDDIDLSKLEPSLPGAHDAIVHVEDGLLKWPVLFLY--PEY 297
S D ++ +PS G+HD IV ++G+ +LF PEY
Sbjct: 170 SELDTSSSFEIQVTDPSTSGSHDMIVRNKNGVKSHALLFTNDPPEY 215
>AF024502-6|AAB70378.4| 402|Caenorhabditis elegans Hypothetical
protein M151.1 protein.
Length = 402
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/57 (24%), Positives = 32/57 (56%)
Frame = -3
Query: 566 SELLSNAKKKKIIMERDQRKQARNIQNITEQKDAVLKAIIERGIKISNCDDEDDIDL 396
+ L S K + + +E++ K + NI ++T +KD +K I+ ++ + + DI++
Sbjct: 202 ASLESYWKTRCLQLEQEMEKLSNNISSLTVEKDKEIKLIVNENRQLRSQLKQKDIEI 258
>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical protein
F25C8.3b protein.
Length = 3175
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = -3
Query: 539 KKIIMERDQRKQARNIQNITEQKDAVLKAIIERGIKISNCDDEDDIDL-SKLEPSL 375
K ++ME+ Q+++ + + E+KDA+ K +E+ S+ D E+D L K +P L
Sbjct: 1626 KMMLMEKMQQEKEKEKEKEKEEKDALKKQSVEQ--DHSSTDTEEDAQLPEKNKPML 1679
>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical protein
F25C8.3a protein.
Length = 3184
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = -3
Query: 539 KKIIMERDQRKQARNIQNITEQKDAVLKAIIERGIKISNCDDEDDIDL-SKLEPSL 375
K ++ME+ Q+++ + + E+KDA+ K +E+ S+ D E+D L K +P L
Sbjct: 1635 KMMLMEKMQQEKEKEKEKEKEEKDALKKQSVEQ--DHSSTDTEEDAQLPEKNKPML 1688
>Z93374-4|CAB07556.1| 834|Caenorhabditis elegans Hypothetical
protein C06C6.6 protein.
Length = 834
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = -3
Query: 608 NTVKRS*KINDKDISELLSNAKKKKIIME 522
N+V +S K+N KD+S L +NAK I+M+
Sbjct: 780 NSVYKSEKLN-KDVSRLKANAKPSPIVMK 807
>Z81037-1|CAB02745.1| 819|Caenorhabditis elegans Hypothetical
protein C17E4.2 protein.
Length = 819
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = -3
Query: 584 INDKDISELLSNAKKKKIIMERDQRKQARNIQNITEQKDAVLKAIIERGIKISNCDDED 408
I+DK+ ++ KKK +E R I + ++K+A+L +E + + DD D
Sbjct: 495 ISDKESKRMVEGCKKKIEELEEQNRFLTVEITKLLDEKEAMLNEAMEDD-EDESSDDSD 552
>U61944-4|AAB03120.1| 891|Caenorhabditis elegans Hypothetical
protein T12E12.2 protein.
Length = 891
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -3
Query: 578 DKDISELLSNAKKKKIIMERDQRKQARNIQNITEQKDAVLKAIIER-GIKISNCDDED 408
D +I E A+KK + E+++++QA+N E + AV K IE G +I D +
Sbjct: 121 DDEIEE--KRARKKAKLEEQNRKEQAKNPHASAETEPAVKKKKIEGVGSRIPKISDRE 176
>AC024765-8|AAF60530.1| 165|Caenorhabditis elegans Hypothetical
protein Y39A3CR.8 protein.
Length = 165
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/52 (23%), Positives = 27/52 (51%)
Frame = -3
Query: 545 KKKKIIMERDQRKQARNIQNITEQKDAVLKAIIERGIKISNCDDEDDIDLSK 390
+KK++ ++QR ++R + K K ++ RG +++ + D +D K
Sbjct: 101 RKKRVTKSKEQRAKSRESKEEERDKAKRRKKLVRRGREVATQEVWDTVDAMK 152
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,529,866
Number of Sequences: 27780
Number of extensions: 401885
Number of successful extensions: 1419
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1419
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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