Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12e08
         (817 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   1.5  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    24   1.5  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    24   1.5  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    24   1.5  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    24   1.5  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    24   1.5  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    24   1.5  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    24   1.5  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          23   2.6  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   7.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   7.8  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 357 SIVSSRKTWLKFREVNVIFVITIGY 431
           SI+++  TWL F  + ++ ++  GY
Sbjct: 43  SIIANIPTWLSFIRIVLVILLRAGY 67


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 69  KRWGAGSQFEIFRYQQIPQIL*RINDVRHFIVTFEINI 182
           +R G GS+  IF  ++I  +L +IN ++       +NI
Sbjct: 164 RRTGEGSK-PIFEREEIKNVLTKINKIKEHDTVLVVNI 200


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 69  KRWGAGSQFEIFRYQQIPQIL*RINDVRHFIVTFEINI 182
           +R G GS+  IF  ++I  +L +IN ++       +NI
Sbjct: 164 RRTGEGSK-PIFEREEIKNVLTKINKIKEHDTVLVVNI 200


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 69  KRWGAGSQFEIFRYQQIPQIL*RINDVRHFIVTFEINI 182
           +R G GS+  IF  ++I  +L +IN ++       +NI
Sbjct: 164 RRTGEGSK-PIFEREEIKNVLTKINKIKEHDTVLVVNI 200


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 69  KRWGAGSQFEIFRYQQIPQIL*RINDVRHFIVTFEINI 182
           +R G GS+  IF  ++I  +L +IN ++       +NI
Sbjct: 153 RRTGEGSK-PIFEREEIKNVLTKINKIKEHDTVLVVNI 189


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 69  KRWGAGSQFEIFRYQQIPQIL*RINDVRHFIVTFEINI 182
           +R G GS+  IF  ++I  +L +IN ++       +NI
Sbjct: 169 RRTGEGSK-PIFEREEIKNVLTKINKIKEHDTVLVVNI 205


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 69  KRWGAGSQFEIFRYQQIPQIL*RINDVRHFIVTFEINI 182
           +R G GS+  IF  ++I  +L +IN ++       +NI
Sbjct: 164 RRTGEGSK-PIFEREEIKNVLTKINKIKEHDTVLVVNI 200


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 69  KRWGAGSQFEIFRYQQIPQIL*RINDVRHFIVTFEINI 182
           +R G GS+  IF  ++I  +L +IN ++       +NI
Sbjct: 164 RRTGEGSK-PIFEREEIKNVLTKINKIKEHDTVLVVNI 200


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 277 VVALRMCRFLVSWSSYSQL 221
           +VAL +  FL++WS Y+ L
Sbjct: 112 MVALMITAFLLAWSPYAAL 130


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = -3

Query: 725 SDLHSETVKKRY 690
           SD+HS+ ++K+Y
Sbjct: 331 SDMHSDNIEKKY 342


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = -3

Query: 725 SDLHSETVKKRY 690
           SD+HS+ ++K+Y
Sbjct: 331 SDMHSDNIEKKY 342


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,321
Number of Sequences: 438
Number of extensions: 5205
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)