Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12e07
         (627 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   0.91 
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    24   0.91 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    24   0.91 
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   2.1  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    22   3.7  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.2 bits (50), Expect = 0.91
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 211  FKCAPMFSTSSSKSVCDLLLVPLKAMC 291
            F CAP     ++K++CD    P KA C
Sbjct: 1305 FNCAPGLHWDNNKNICDW---PEKATC 1328


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 24.2 bits (50), Expect = 0.91
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -2

Query: 614 ELLPIHYVNRQGKNILTHSIKITTKMLKVATTLRVISSQGNQVRTLATAAAYKQ 453
           ELL I   +  GK  L +++   T      + LR ++      +TLA+ +AY Q
Sbjct: 105 ELLAILGSSGAGKTTLLNTLTFHTSSNLTVSGLRCVNGIPVSSKTLASQSAYVQ 158


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 24.2 bits (50), Expect = 0.91
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -2

Query: 614 ELLPIHYVNRQGKNILTHSIKITTKMLKVATTLRVISSQGNQVRTLATAAAYKQ 453
           ELL I   +  GK  L +++   T      + LR ++      +TLA+ +AY Q
Sbjct: 105 ELLAILGSSGAGKTTLLNTLTFHTSSNLTVSGLRCVNGIPVSSKTLASQSAYVQ 158


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 117 LYDISKDLYCYGDVISEAFCVKNCLFPGRVGV 212
           ++D+S D +C GD      C +NC+   +V +
Sbjct: 544 IHDLSPDQFCNGD-NRPPDCGQNCMCTHQVDI 574


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +2

Query: 335 GSQRRSRVLQWQ 370
           G+ R++RVLQW+
Sbjct: 81  GTNRKNRVLQWR 92


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,723
Number of Sequences: 336
Number of extensions: 3118
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)