Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12e07
(627 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp... 185 5e-48
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida... 76 4e-15
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ... 54 2e-08
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 43 3e-05
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 36 0.005
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 30 0.24
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 28 1.3
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 27 1.7
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi... 27 2.2
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po... 26 5.1
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 25 6.8
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 25 6.8
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce... 25 9.0
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce... 25 9.0
>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
beta subunit Qcr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 457
Score = 185 bits (450), Expect = 5e-48
Identities = 94/151 (62%), Positives = 110/151 (72%), Gaps = 1/151 (0%)
Frame = -2
Query: 452 ALVNVPPTKLTVLDNGLRIATEDSG-AATATVGLWIDAGSRYETSKNNGVAHFLEHMAFK 276
A +P T+ T L NGL +ATE A TATV + +DAGSR ET+KNNG AHFLEH+AFK
Sbjct: 15 ATTALPKTETTTLKNGLTVATEHHPYAQTATVLVGVDAGSRAETAKNNGAAHFLEHLAFK 74
Query: 275 GTSKRSQTDLELLVENMGAHLNAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEP 96
GT RSQ LEL EN GAHLNAYTSREQTV+YA N VP AV +LADI+ NSS++
Sbjct: 75 GTKNRSQKALELEFENTGAHLNAYTSREQTVYYAHAFKNAVPNAVAVLADILTNSSISAS 134
Query: 95 EIERERGVILREMQDVESNLQEVVFDHLHAT 3
+ERER VILRE ++V+ EVVFDHLHAT
Sbjct: 135 AVERERQVILREQEEVDKMADEVVFDHLHAT 165
>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 494
Score = 76.2 bits (179), Expect = 4e-15
Identities = 37/138 (26%), Positives = 74/138 (53%)
Frame = -2
Query: 416 LDNGLRIATEDSGAATATVGLWIDAGSRYETSKNNGVAHFLEHMAFKGTSKRSQTDLELL 237
L NG+ + + +G+++ AGSRYET K +GV+HF++ +AF+ T + +++
Sbjct: 51 LKNGVTYVCDPRPGHFSGLGVYVKAGSRYETKKFSGVSHFMDRLAFQATERTPVGEMKAK 110
Query: 236 VENMGAHLNAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEPEIERERGVILREM 57
+EN+G + TSRE ++ A +DV ++LA+ + + E ++ R I+ E
Sbjct: 111 LENLGGNYMCSTSRESMIYQAAVFNDDVKSMSKLLAETVLAPKIQEDDLVHYRDSIIYEN 170
Query: 56 QDVESNLQEVVFDHLHAT 3
++ + ++ + H T
Sbjct: 171 SELWTKPDALLGEFAHVT 188
>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 426
Score = 54.0 bits (124), Expect = 2e-08
Identities = 31/109 (28%), Positives = 55/109 (50%)
Frame = -2
Query: 407 GLRIATEDSGAATATVGLWIDAGSRYETSKNNGVAHFLEHMAFKGTSKRSQTDLELLVEN 228
G+ A ++ AT ++ + I+AGSRY+ GV+H LE AFK T +RS + E
Sbjct: 30 GVSFAGRETPTATGSLSVVINAGSRYQPDA--GVSHLLEKFAFKTTEERSALRITRESEL 87
Query: 227 MGAHLNAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEPEIERE 81
+G L+ +RE + A+ L + +LA+++ + ++ E
Sbjct: 88 LGGQLSTQITREHIILTARFLNEYLEYYARLLAEVVDATKFLPFQLTEE 136
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 43.2 bits (97), Expect = 3e-05
Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 3/133 (2%)
Frame = -2
Query: 428 KLTVLDNGLRIA-TEDSGAATATVGLWIDAGSRYETSKNNGVAHFLEHMAFKGTSK-RSQ 255
+L L+N L + D A+ + + GS+ + G+AHF EH+ F GT K +
Sbjct: 25 RLIKLENDLEVLLVRDPETDNASAAIDVHIGSQSNPRELLGLAHFCEHLLFMGTKKYPDE 84
Query: 254 TDLELLVENMGAHLNAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEPEIERE-R 78
+ +E+ NAYT+ T +Y + + + A++ A + E +RE R
Sbjct: 85 NEYRKYLESHNGISNAYTASNNTNYYFEVSHDALYGALDRFAQFFIDPLFLEECKDREIR 144
Query: 77 GVILREMQDVESN 39
V ++++S+
Sbjct: 145 AVDSEHCKNLQSD 157
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 35.9 bits (79), Expect = 0.005
Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 12/116 (10%)
Frame = -2
Query: 329 ETSKNNGVAHFLEHMAFKGTSKRSQTD-LELLVENMGAHLNAYTSREQTVFYAKCLAND- 156
E N G H LEH+ F G+ K L +NA T + T + D
Sbjct: 52 EAHDNLGCPHTLEHLCFMGSKKYPMNGILTKFAGRACGDINACTDVDYTSYELSAAEEDG 111
Query: 155 ----VPV-AVEILADIIQNSSLAEPEIE-----RERGVILREMQDVESNLQEVVFD 18
+PV A IL+ I+ + + E GV+ EMQ+ +S+ +V+FD
Sbjct: 112 FLRLLPVFADHILSPILSDEAFCTEVYHINGMGEESGVVYSEMQNTQSSETDVMFD 167
>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 992
Score = 30.3 bits (65), Expect = 0.24
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -2
Query: 341 GSRYETSKNNGVAHFLEHMAFKGTSKRSQTD--LELLVENMGAHLNAYTSREQTVFYAKC 168
G + + G+ H LEH G++K D ++L ++ +NA+T+ + T FY
Sbjct: 78 GFQTPAENDEGIPHILEHTTLCGSNKYPVRDPFFKMLNRSLATFMNAFTASDFT-FYPFA 136
Query: 167 LAN 159
N
Sbjct: 137 TVN 139
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 69 NDTAFSFDFGFGEGGILYDISKDLYCYG 152
N F +F G+ G+ YDI + L YG
Sbjct: 641 NRNIFHIEFDLGDSGLTYDIGEALGVYG 668
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 27.5 bits (58), Expect = 1.7
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = -2
Query: 305 AHFLEHMAFKGTSKRSQTDLELLVENMGAHLNAYTSREQTVFYAKCLANDVPVAV-EILA 129
A+F + +G+ S T L V N + ++ RE+ VF + PV++ + +
Sbjct: 430 AYFSKSRYVEGSGSMSTTPLATSVNNSYKLPSGFSVREEAVFSSPTTEGSRPVSLARLKS 489
Query: 128 DIIQNSSLAEPE 93
+ I S A PE
Sbjct: 490 EPIFRSDTASPE 501
>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
Ran1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 470
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 226 WVHT*TPTRPGNKQFFTQNASLMTSP 149
W H TPT P + Q T N+SL P
Sbjct: 361 WNHCATPTIPVSLQVLTPNSSLKVDP 386
>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 5.1
Identities = 23/107 (21%), Positives = 43/107 (40%)
Frame = -2
Query: 392 TEDSGAATATVGLWIDAGSRYETSKNNGVAHFLEHMAFKGTSKRSQTDLELLVENMGAHL 213
T+ SG +GLW+ Y+ SK + + F+ + LEL + M
Sbjct: 280 TQGSGIFLTAIGLWL-----YDRSKKGNLYESCKVKEFEKDA------LELEEQTMEDEK 328
Query: 212 NAYTSREQTVFYAKCLANDVPVAVEILADIIQNSSLAEPEIERERGV 72
+ +S Q+ FY K + ++ + +I +S + + GV
Sbjct: 329 SYPSSGTQSPFYGKNFLPQITPRLDSVVPLISDSPMTPNSVYSNEGV 375
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +3
Query: 291 FKEMSDTIVLGGFIAGASVDPESYSGSGGSRIFSSN 398
F+ + + + G +I +D ++ + GGSR+F N
Sbjct: 328 FEHIYEANIFGLYIQSPQLDIQTVAAGGGSRLFWRN 363
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 340 PASIQSPTVAVAAPESSVAIRKPLSSTVS 426
P+S++ P P S ++ + P S+TVS
Sbjct: 189 PSSLEKPAGTGDLPSSEISTKAPASTTVS 217
>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 393
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 117 LYDISKDLYCYGDVISEAFCVKNC 188
LY +S L+ +GD SEAF + C
Sbjct: 235 LYILSSYLFQFGDQFSEAFLLDVC 258
>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 174
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 140 EILADIIQNSSLAEPEIERER 78
+I D+I NSS + EIER R
Sbjct: 7 QIFEDLISNSSFSNEEIERIR 27
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,566,417
Number of Sequences: 5004
Number of extensions: 52641
Number of successful extensions: 153
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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