Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12e07
         (627 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            29   0.091
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            25   2.6  
AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative FGF-sign...    24   4.5  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         23   7.9  

>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 29.5 bits (63), Expect = 0.091
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +3

Query: 12   KVIKHNLLKVTFDILHFAKNDTAFSFDFGFGEGGILYDISKDLYCYGDVIS 164
            KV   N L  ++ I +  +ND   S  + FG GG  + +  D    GDVIS
Sbjct: 2046 KVYVINTLNTSYSIDYEYENDNLRSIKYPFGAGGEPFRLIYDWNGNGDVIS 2096


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = -2

Query: 125 IIQNSSLAEPEIERERGVILREMQDVESNLQEVVFDHLH 9
           +++  +  E ++ERER  ++   + +    + VV  HLH
Sbjct: 810 VVEGGTKDETDMERERKEMVERSRPLRKRKRLVVQQHLH 848


>AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative FGF-signaling
            promoter protein.
          Length = 1197

 Score = 23.8 bits (49), Expect = 4.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 124  SYRIPPSPNPKSNE 83
            +Y +PPSP P S E
Sbjct: 1051 NYMVPPSPRPVSEE 1064


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.0 bits (47), Expect = 7.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 480 RTYLIALAGNYSQSGCYFQHFCCDLY 557
           RT ++ LAG    +GC  +  C +L+
Sbjct: 184 RTRILGLAGPLHGAGCTPERLCWELH 209


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 668,226
Number of Sequences: 2352
Number of extensions: 14386
Number of successful extensions: 72
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 61050630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)