Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12e04
(581 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0238 + 1854070-1854344,1854621-1854712,1854852-1855045,185... 34 0.095
07_01_0945 - 7973736-7974275,7974446-7974580 31 0.89
03_05_0267 - 22538631-22539452 30 1.5
06_03_0927 + 26015956-26018230,26018323-26018471,26018550-260186... 29 2.0
09_04_0627 - 19061106-19061474,19062067-19062909,19063395-190635... 29 2.7
03_02_0283 - 7078754-7078856,7079358-7079431,7079995-7080090,708... 29 2.7
09_04_0634 - 19132916-19134033,19134716-19135915,19136002-191361... 29 3.6
05_05_0290 - 23879064-23880035 29 3.6
12_02_1057 + 25733376-25735439 28 4.7
06_02_0177 + 12644270-12644581,12645717-12646054,12646291-12646489 28 4.7
02_02_0200 - 7718760-7718816,7718910-7719011,7719643-7719726,771... 28 4.7
10_08_0075 - 14676835-14677173,14677776-14678426,14678734-146789... 27 8.2
05_04_0190 - 18922555-18923349 27 8.2
>03_01_0238 +
1854070-1854344,1854621-1854712,1854852-1855045,
1855529-1855568,1855734-1855815,1856972-1857049,
1857144-1857269,1857544-1857665,1858018-1858057,
1858250-1858324,1858414-1858585
Length = 431
Score = 33.9 bits (74), Expect = 0.095
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 327 WTPTASAPLATARGRRRSENETSPSLPYP 413
W + P A ARGRRR+ PSLP+P
Sbjct: 61 WRIDGNKPAAAARGRRRASLTAMPSLPFP 89
>07_01_0945 - 7973736-7974275,7974446-7974580
Length = 224
Score = 30.7 bits (66), Expect = 0.89
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 158 APSSPALVPRTWPGIYSDAATTGRRCCSTTCPPVAPLAA 42
AP+ P P WP + S A + C + PVAPL++
Sbjct: 157 APAPPLSSPCRWPRVASTGARQWQGCHAAWLSPVAPLSS 195
>03_05_0267 - 22538631-22539452
Length = 273
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -1
Query: 176 PRCWRRAPSSPALVPRTWPGIYSDAATTGRRCCSTTCPPVAP 51
PR W +PSSP P P S +++ R CS P +P
Sbjct: 178 PRWWPCSPSSPPASPSPSPARTSPPSSSPSRGCSARRPTPSP 219
>06_03_0927 +
26015956-26018230,26018323-26018471,26018550-26018618,
26018701-26018853,26018927-26019090,26019207-26019354,
26020348-26020470,26020560-26020647,26020781-26020950
Length = 1112
Score = 29.5 bits (63), Expect = 2.0
Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +1
Query: 46 ARGATGGHVVEQHRLPVVAAS-EYIPGHVLGTSAGLLGARLQHLGDVTPGRSGSQLPKYR 222
A G T H V R + A E IP VL +GL H P + QLP
Sbjct: 345 AYGYTHMHPVPHEREMMYAQQVEGIPNTVLIDPSGLHQHVYVHQQQQVPPQ---QLPSTY 401
Query: 223 GFEQLPVLPD 252
GF Q+PV+P+
Sbjct: 402 GFNQIPVIPN 411
>09_04_0627 -
19061106-19061474,19062067-19062909,19063395-19063501,
19064301-19064332,19064384-19064663,19065092-19065475,
19066730-19066803,19067244-19067310,19067415-19067486,
19067941-19068000,19068683-19068734,19068874-19068943,
19069110-19069372
Length = 890
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = -1
Query: 197 DRPGVTSPRCWRRAPSSPALVPRTWPGIYSD-AATTGRRCC 78
D + PR RR+P+ P L+P P D RRCC
Sbjct: 369 DAISYSHPRAKRRSPTPPGLIPVGLPTCNPDLIEVEDRRCC 409
>03_02_0283 -
7078754-7078856,7079358-7079431,7079995-7080090,
7080145-7080270,7080856-7080939,7081458-7081506,
7081630-7081688,7081908-7081925,7082141-7082620
Length = 362
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -1
Query: 200 PDRPGVTSPRCWRRAPSSPALVPRTWPGIYSDAATTGRRCCSTTCPPVAP 51
P RP TSP A +SP +PR + + AA++ RR ++ P P
Sbjct: 6 PQRPPATSPPAPAAAAASPQPLPRAF---LAAAASSPRRAAASPAPAPPP 52
>09_04_0634 -
19132916-19134033,19134716-19135915,19136002-19136106,
19136273-19136315,19137622-19137740,19138074-19138172,
19138264-19138480
Length = 966
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 239 PSFPIILQLSRTQYTCFLSAASSISSPFIMD 331
P PII Q+S +Q+ L S +PFI+D
Sbjct: 508 PEVPIIGQVSASQHVALLMDQVSTKNPFILD 538
>05_05_0290 - 23879064-23880035
Length = 323
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 124 HVLGTSAGLLGARLQHLGDVTPGRSGSQLPKYRGFEQLPVL 246
+VLG LL LQHL + P R+G+ K E LP +
Sbjct: 154 YVLGAGLSLL---LQHLAESDPSRNGTPPAKKEAVEALPTV 191
>12_02_1057 + 25733376-25735439
Length = 687
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +2
Query: 50 EAPPAGM*SNSTAFLL*PHLNIFQATSSGLAPGCSAHASSTLVTSR 187
EAPP + + P ++ F TSS +A G S+ ++ T +SR
Sbjct: 633 EAPPPSLPARMPVATFLPPVDAFNHTSSSVATGSSSASTDTTRSSR 678
>06_02_0177 + 12644270-12644581,12645717-12646054,12646291-12646489
Length = 282
Score = 28.3 bits (60), Expect = 4.7
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Frame = +2
Query: 110 NIFQATSSGLAPGCSAHASSTLVTSRPAGLAASF-PSIAALSSFPSFPIILQLSRTQYTC 286
++ + TSS L+ C AH+SS SRP F + AA SS PS I + ++
Sbjct: 10 SLLRRTSSALSRRC-AHSSSAAAPSRPPVPLPRFRAAAAAASSSPSSGI----TSRRFLA 64
Query: 287 FLSAASSISSPFIMDSN---SLGSTRDCARQASE 379
S +SS S D N + S +C Q+ E
Sbjct: 65 SKSPSSSSPSKASADENLVRVIDSEIECIVQSEE 98
>02_02_0200 -
7718760-7718816,7718910-7719011,7719643-7719726,
7719821-7719916,7720016-7720066,7720162-7720302,
7720717-7720773,7720864-7720938,7721033-7721305,
7721382-7721441,7721531-7721620,7722519-7722638
Length = 401
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 28 DSPXXAARGATGGHVVEQHRLPVVAASEYIPGHVLGTSAG 147
D P AA A E+H ++ S+ + GH++ T+ G
Sbjct: 23 DQPRSAAAAAAVAPAGEKHGASLMEGSDPVTGHIISTTIG 62
>10_08_0075 -
14676835-14677173,14677776-14678426,14678734-14678948,
14679510-14679783,14680249-14680410
Length = 546
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = +1
Query: 274 AVHVLPQRCVIYQLAVHHGLQQPRLHSRLREAGVGV 381
AV VL Q +LAV + QP +H+RL AG GV
Sbjct: 16 AVAVLAQPPACARLAVAGLVAQPPVHARLAVAGRGV 51
>05_04_0190 - 18922555-18923349
Length = 264
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 122 ATSSGLAPGCSAHASSTLVTSRPAGLAASFPSIAALSSFPSFPIIL 259
A ++G C T V + + L +FP ++ LSS PS P L
Sbjct: 39 ANAAGAVLACPRCRHPTAVGNSVSALRKNFPILSLLSSSPSSPSFL 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,924,993
Number of Sequences: 37544
Number of extensions: 282739
Number of successful extensions: 1220
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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