Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12e04
(581 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF162673-1|AAF80461.1| 568|Caenorhabditis elegans CNT-like nucl... 31 0.60
AF016413-5|AAB65255.1| 568|Caenorhabditis elegans Hypothetical ... 31 0.60
U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase... 29 1.8
U10333-1|AAA50224.1| 859|Caenorhabditis elegans RNA polymerase ... 29 1.8
AF162674-1|AAF80462.1| 575|Caenorhabditis elegans CNT-like nucl... 29 2.4
AF016413-4|AAM29683.1| 454|Caenorhabditis elegans Hypothetical ... 29 2.4
AF016413-3|AAB65256.3| 555|Caenorhabditis elegans Hypothetical ... 29 2.4
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr... 28 4.2
U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical p... 28 5.6
U23176-4|AAC46716.1| 632|Caenorhabditis elegans Fem-3 mrna bind... 28 5.6
AC006656-6|AAF39879.1| 614|Caenorhabditis elegans Fem-3 mrna bi... 28 5.6
AF047656-13|AAC05105.1| 313|Caenorhabditis elegans Collagen pro... 27 7.4
AF039052-7|AAO91672.2| 462|Caenorhabditis elegans Hypothetical ... 27 7.4
AF039052-6|AAF98635.2| 534|Caenorhabditis elegans Hypothetical ... 27 7.4
>AF162673-1|AAF80461.1| 568|Caenorhabditis elegans CNT-like
nucleoside transporter protein.
Length = 568
Score = 31.1 bits (67), Expect = 0.60
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 134 GLAPGCSAHASSTLVTSRPAGLAASFPSIAALSSFPSFPIILQLSRTQYTCF 289
GLAPG AS ++ + AG A F + S P++ + + TCF
Sbjct: 513 GLAPGRKTVASKVMLRALCAGAIACFMNATVAGILISDPVVCNSANSNSTCF 564
>AF016413-5|AAB65255.1| 568|Caenorhabditis elegans Hypothetical
protein F27E11.1 protein.
Length = 568
Score = 31.1 bits (67), Expect = 0.60
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 134 GLAPGCSAHASSTLVTSRPAGLAASFPSIAALSSFPSFPIILQLSRTQYTCF 289
GLAPG AS ++ + AG A F + S P++ + + TCF
Sbjct: 513 GLAPGRKTVASKVMLRALCAGAIACFMNATVAGILISDPVVCNSANSNSTCF 564
>U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase ii
(b) subunit protein2 protein.
Length = 1193
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/74 (27%), Positives = 30/74 (40%)
Frame = +1
Query: 4 IGTKXTRDDSPXXAARGATGGHVVEQHRLPVVAASEYIPGHVLGTSAGLLGARLQHLGDV 183
+G ++D P A G T ++ H +P S GH++ G L A +GD
Sbjct: 951 MGIMYRQEDMPF-TAEGLTPDIIINPHAVP----SRMTIGHLIECLQGKLSANKGEIGDA 1005
Query: 184 TPGRSGSQLPKYRG 225
TP + K G
Sbjct: 1006 TPFNDTVNVQKISG 1019
>U10333-1|AAA50224.1| 859|Caenorhabditis elegans RNA polymerase II,
second largestsubunit protein.
Length = 859
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/74 (27%), Positives = 30/74 (40%)
Frame = +1
Query: 4 IGTKXTRDDSPXXAARGATGGHVVEQHRLPVVAASEYIPGHVLGTSAGLLGARLQHLGDV 183
+G ++D P A G T ++ H +P S GH++ G L A +GD
Sbjct: 752 MGIMYRQEDMPF-TAEGLTPDIIINPHAVP----SRMTIGHLIECLQGKLSANKGEIGDA 806
Query: 184 TPGRSGSQLPKYRG 225
TP + K G
Sbjct: 807 TPFNDTVNVQKISG 820
>AF162674-1|AAF80462.1| 575|Caenorhabditis elegans CNT-like
nucleoside transporter protein.
Length = 575
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +2
Query: 134 GLAPGCSAHASSTLVTSRPAGLAASFPSIAALSSFPSFPIILQLSRTQYTCF 289
GLAP + S ++ + AG A F + S P+I Q S+ TCF
Sbjct: 519 GLAPSKRSTISKLVLRALCAGSIACFMNATVAGILISSPVICQSSQKSDTCF 570
>AF016413-4|AAM29683.1| 454|Caenorhabditis elegans Hypothetical
protein F27E11.2b protein.
Length = 454
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +2
Query: 134 GLAPGCSAHASSTLVTSRPAGLAASFPSIAALSSFPSFPIILQLSRTQYTCF 289
GLAP + S ++ + AG A F + S P+I Q S+ TCF
Sbjct: 398 GLAPSKRSTISKLVLRALCAGSIACFMNATVAGILISSPVICQSSQKSDTCF 449
>AF016413-3|AAB65256.3| 555|Caenorhabditis elegans Hypothetical
protein F27E11.2a protein.
Length = 555
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +2
Query: 134 GLAPGCSAHASSTLVTSRPAGLAASFPSIAALSSFPSFPIILQLSRTQYTCF 289
GLAP + S ++ + AG A F + S P+I Q S+ TCF
Sbjct: 499 GLAPSKRSTISKLVLRALCAGSIACFMNATVAGILISSPVICQSSQKSDTCF 550
>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical
protein F36F2.3a protein.
Length = 1128
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 119 QATSSGLAPGCSAHASSTLVTSRPAGLAASFPSIAALSSFPSFPIILQL 265
Q T SG++PG + T +TS +G + S S P P+ Q+
Sbjct: 343 QITPSGISPGSTLVQQQTTLTSVSSGTSLSAQPSNVNPSIPGIPLASQV 391
>U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical
protein C56C10.12 protein.
Length = 1599
Score = 27.9 bits (59), Expect = 5.6
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +2
Query: 56 PPAGM*SNSTAFLL*PHLNIFQATSSGLAPGCSAHASSTLVTSRPAGLAASFPSIAALSS 235
PP + A + P IF ++S +A S S+T V + + AS+P++ L+
Sbjct: 90 PPPRVSQEREAPPIPPRSMIFPRSTSMVAE--SRKESTTAVAPKRSVAVASYPAVPELAE 147
Query: 236 FPSFPIILQ 262
PS+ LQ
Sbjct: 148 LPSYTDALQ 156
>U23176-4|AAC46716.1| 632|Caenorhabditis elegans Fem-3 mrna binding
factor protein 2 protein.
Length = 632
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +2
Query: 158 HASSTLVTSRPAGLAASFPSIAALSSFPSFPIILQLSRTQYTCFLSAASSIS 313
H + +VTSRP S+ + SFP+ + + +SR++ + F+ + + S
Sbjct: 66 HQQNHIVTSRPPTPLTDLMSLRSFQSFPN--VFMPVSRSRTSSFIQSDTDSS 115
>AC006656-6|AAF39879.1| 614|Caenorhabditis elegans Fem-3 mrna
binding factor protein 1 protein.
Length = 614
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +2
Query: 158 HASSTLVTSRPAGLAASFPSIAALSSFPSFPIILQLSRTQYTCFLSAASSIS 313
H + +VTSRP S+ + SFP+ + + +SR++ + F+ + + S
Sbjct: 66 HQQNHIVTSRPPTPLTDLMSLRSFQSFPN--VFMPVSRSRTSSFIQSDTDSS 115
>AF047656-13|AAC05105.1| 313|Caenorhabditis elegans Collagen
protein 116 protein.
Length = 313
Score = 27.5 bits (58), Expect = 7.4
Identities = 18/75 (24%), Positives = 27/75 (36%)
Frame = -1
Query: 251 SGRTGSCSKPRYLGSWLPDRPGVTSPRCWRRAPSSPALVPRTWPGIYSDAATTGRRCCST 72
+G G P G PG+ P P +P PG++ D G+
Sbjct: 230 AGPPGPPGPPGSPGENTEGAPGLDGPLGPPGKPGTPGTDGA--PGVFGDDGVPGQDAQYC 287
Query: 71 TCPPVAPLAAXXGES 27
CPP P+ + +S
Sbjct: 288 QCPPRTPIGSADADS 302
>AF039052-7|AAO91672.2| 462|Caenorhabditis elegans Hypothetical
protein T22D1.3b protein.
Length = 462
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +1
Query: 130 LGTSA----GLLGARLQHLGDVTPGRSGSQLPKYRGFEQLPVLPDHLTTE 267
LG SA GLL A + G+ G G ++ KYRG L + H +++
Sbjct: 397 LGASAVMMGGLLAATTEAPGEYFWGPGGVRVKKYRGMGSLDAMEAHASSQ 446
>AF039052-6|AAF98635.2| 534|Caenorhabditis elegans Hypothetical
protein T22D1.3a protein.
Length = 534
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +1
Query: 130 LGTSA----GLLGARLQHLGDVTPGRSGSQLPKYRGFEQLPVLPDHLTTE 267
LG SA GLL A + G+ G G ++ KYRG L + H +++
Sbjct: 397 LGASAVMMGGLLAATTEAPGEYFWGPGGVRVKKYRGMGSLDAMEAHASSQ 446
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,651,005
Number of Sequences: 27780
Number of extensions: 203893
Number of successful extensions: 769
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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