Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12e03
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.09c |cox13||cytochrome c oxidase subunit VIa|Schizosacc...    47   2e-06
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    34   0.019
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.70 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   1.6  
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    27   2.1  
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.5  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    25   6.5  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    25   8.6  

>SPCC1739.09c |cox13||cytochrome c oxidase subunit
           VIa|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 130

 Score = 46.8 bits (106), Expect = 2e-06
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
 Frame = -1

Query: 297 HGKDTWEKYRNFTYFVLLPLIAIQSFNAL-------GHEPPPKGPCRDYEYMRVRTKRFP 139
           H K + E ++  TY++  P + + S NA         H    +     Y +  +R K++P
Sbjct: 49  HAKRSSEFWKKVTYYIGGPALILASANAYYIYCKHQEHAKHVEDTDPGYSFENLRFKKYP 108

Query: 138 WGDGVKSFYHNEHVNHLPGECE 73
           WGDG K+ + N+ VNHL  + E
Sbjct: 109 WGDGSKTLFWNDKVNHLKKDDE 130


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 33.9 bits (74), Expect = 0.019
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
 Frame = +3

Query: 225 FVSLSKAIIQSM*NSCIFPKCLYRGEIEEHRDYNKSVQACN---QPVAR*LFHCQALEDS 395
           FV ++KA    + +  +FP+ L     E     ++SVQ  N    P+    FHC   ED 
Sbjct: 174 FVRITKAYPHGLPSFHLFPQFLSAELFESASTVHRSVQCDNCLAHPIVGPRFHCLVCEDY 233

Query: 396 RICLDVVDH 422
            +C   V H
Sbjct: 234 DLCSSCVSH 242


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = -1

Query: 453 TVEKARRYSLCGPPRPSKCGCPPKPGSGKVIVPPADCKPGPICYNPCVP 307
           TVE+ ++  L  PP P      P P    + VPP    P PI   P  P
Sbjct: 720 TVEEQQKLLLKSPPPPPPAVIVPTPAPAPIPVPP----PAPIMGGPPPP 764


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = -1

Query: 429  SLCGPPRPSKCGCPPKPGSGKVIVPPADCKPGPICYNPCVPR 304
            S+  PP P+  G PP P    V  PP    P P    P VP+
Sbjct: 1146 SVAAPPVPAPSGAPPVP-KPSVAAPPV---PAPSSGIPPVPK 1183


>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
 Frame = -2

Query: 491 LTLSI-NLKGH*FGQLKKPDATVFVVHHVQANAAVLQSLAVEKSSCHRLIASLDRFVIIP 315
           L LSI  + GH FG L      V  VH V+A + +   LA      H + +++  F ++P
Sbjct: 74  LPLSIFQIGGHVFGSLATTKIPVSTVHTVKALSPLFTVLAYRFMFRH-VYSAMTYFSLVP 132

Query: 314 VFLDFTTVKTLGKNTGISHTLY 249
           +    T   +   +  I   LY
Sbjct: 133 LTFGVTLACSFELSADIVGLLY 154


>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = +1

Query: 439 GFFN--CPNQWPFKFIDNVKAHILIVI 513
           G FN   PN+W F FI N+    LI +
Sbjct: 94  GLFNPKTPNKWKFLFILNIGVTALITV 120


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
 Frame = -1

Query: 450 VEKARRYSLCGPPRPSKCGCPPKPGSGKVI---VPPADCKPGPI 328
           VE  +  +    P  S  G P +  S K     VPPA+ KP P+
Sbjct: 288 VEHPKPTATTSAPSASPTGVPVEEESHKATSDAVPPAEAKPEPV 331


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 114 YHNEHVNHLPGECEAPPLD 58
           YH+E+VN++P   +AP  D
Sbjct: 236 YHHENVNYVPTIADAPLTD 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,116
Number of Sequences: 5004
Number of extensions: 54876
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)