Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12e02
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.08 |dlc1||dynein light chain Dlc1|Schizosaccharomyces p...    38   7e-04
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch...    25   5.6  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   7.3  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    25   7.3  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   9.7  
SPAC12B10.07 |acp1||F-actin capping protein alpha subunit|Schizo...    25   9.7  

>SPAC1805.08 |dlc1||dynein light chain Dlc1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 111

 Score = 38.3 bits (85), Expect = 7e-04
 Identities = 23/103 (22%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
 Frame = -1

Query: 379 EVQQIVRDNVELCLGGNAYSHSRTPQWITIITEKTLARLNKLNKPYKYIMRITITQK--- 209
           ++++I  +  +  L  + Y   +T +    +    L  LNK  + YK+I+  T+ QK   
Sbjct: 9   KLEEICLEAAQPVLKASEYDGDKTAEMNQSVIYAVLNALNKETQSYKWIVSSTLVQKLPE 68

Query: 208 --NGSGLHTAAAYYWDIATDGTCTVRWENKYMYCIVNIWALAL 86
                G+H A A  W+   DG  T++   + +  +++I  +++
Sbjct: 69  DHPSRGVHAAHAACWNCEKDGMTTIKESGEAIDVVLSIMWISI 111


>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 747

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -2

Query: 189 QPLRTTGTSLQMARAQCVGKISTCIAL*IYGRLLFK 82
           + L T  T+ ++A AQ VGK++  + L ++ + L+K
Sbjct: 557 EALLTVSTAFEIASAQGVGKLNLDLDLGLFVQRLYK 592


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 79   IFEEQAPIYSQCNTCTYFPNALCTCHL 159
            +FE +AP  +  + CT    +   CHL
Sbjct: 1783 LFENKAPFVNSTSICTAVSESRSCCHL 1809


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 1/100 (1%)
 Frame = -1

Query: 388 NVDEVQQIVRDNVELCLGGNAYSHSRTPQWITIITEKTLARLNKLNKP-YKYIMRITITQ 212
           +V E+  +   +    L  N Y    +P     +  K+    +    P  + +  +   +
Sbjct: 578 HVPELYSVEEHSNVYSLLSNIYGRIESPITAWDVLSKSFPPGSMTGAPKLRSVRMLEPLE 637

Query: 211 KNGSGLHTAAAYYWDIATDGTCTVRWENKYMYCIVNIWAL 92
           ++G G+++    YWD+       V   + + Y   + W +
Sbjct: 638 QHGRGIYSGTLGYWDVTGSAEFNVIIRSAFKYKADDYWRI 677


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -3

Query: 311 NATVDNYNHREDLSSIE*IKQALQIYHENYHNSEEWFRFAYSRCVLL 171
           N  V+N +        E  + AL+I  ENYH+     ++  S+ VL+
Sbjct: 267 NEEVENRSTTRRFDETESFRHALRILVENYHSKHA--KYESSKAVLV 311


>SPAC12B10.07 |acp1||F-actin capping protein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 275 LSSIE*IKQALQIYHENYHNS 213
           LS  E I + L++YHE+Y++S
Sbjct: 30  LSDEEAIHEQLKLYHEDYNSS 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,234,060
Number of Sequences: 5004
Number of extensions: 45194
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)