Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12e02
         (550 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1018 + 23326465-23326493,23326679-23327465                       28   5.6  
01_05_0600 + 23566223-23566355,23567752-23567855,23567958-235680...    27   7.5  
03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,117...    27   9.9  

>07_03_1018 + 23326465-23326493,23326679-23327465
          Length = 271

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 337 PNTTLHCLLLSVALHRR*MLNPLRHPLEPLVTINSLLRL 453
           P+T    LLL  + H   +LNPL H L  L  + +LL L
Sbjct: 14  PSTEGLVLLLHESTHVARLLNPLTHQLTDLPPVTTLLDL 52


>01_05_0600 +
           23566223-23566355,23567752-23567855,23567958-23568053,
           23568134-23568253,23568543-23568710,23568921-23569012,
           23569739-23569857,23570547-23570670,23570801-23570924,
           23571291-23571359,23571470-23571561,23571645-23571722,
           23571927-23571994,23572073-23572209
          Length = 507

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +2

Query: 134 PTHCARAICSDVPVVRSGCMQTGTILLSYGNSHDIFVRLV 253
           PT  AR++ +   VVR G   TG  + + GNS+D+  +L+
Sbjct: 446 PTRPARSLSTLTRVVRRGAESTG--IEANGNSYDLSTKLL 483


>03_01_0149 -
           1175689-1176258,1176345-1176509,1176631-1177539,
           1178179-1178378,1178505-1178605,1178747-1179369,
           1179451-1179546,1179637-1179798,1179889-1180068,
           1180173-1180323,1180408-1180641,1180753-1180913,
           1181041-1181163,1181261-1181421,1181655-1181877,
           1181952-1182346,1182461-1182671,1183536-1184522
          Length = 1883

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 205 GSGLHTAAAYYWDIATDG 152
           G+G H AAAY++D   DG
Sbjct: 10  GAGEHAAAAYWYDACEDG 27


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,680,420
Number of Sequences: 37544
Number of extensions: 270863
Number of successful extensions: 535
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)