Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte12d23
         (385 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   4.1  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    24   7.1  
SPAC1071.09c |||DNAJ domain protein, DNAJC9 family|Schizosacchar...    24   9.4  

>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = -2

Query: 174 QDSLGISRMFNDNCDLYEYNCDEKKQYRHVKMDVCKY--EAAASERM 40
           Q+ LG S     NC +  ++C E    RH   D C +  E  A E M
Sbjct: 137 QEILGCSHYMR-NCKVQCFDCHEWYTCRHCHNDACDHVLERPAVENM 182


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -2

Query: 171 DSLGISRMFNDNCDLYEYNCDEKKQYRHVKMDV 73
           DS GI  +  DNC L  Y  D   +   +  DV
Sbjct: 810 DSKGIETVRRDNCPLVSYVIDTALRKMLIDQDV 842


>SPAC1071.09c |||DNAJ domain protein, DNAJC9
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 234 VINFCKIADQCQHDFVPV 181
           ++N C I D+CQ   +P+
Sbjct: 4   LLNLCYIKDECQFSLLPL 21


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,369,717
Number of Sequences: 5004
Number of extensions: 23462
Number of successful extensions: 63
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)