Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12d22
(687 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB014583-1|BAA31658.3| 844|Homo sapiens KIAA0683 protein protein. 36 0.14
BC017188-1|AAH17188.1| 837|Homo sapiens TEL2, telomere maintena... 36 0.18
AL031705-4|CAC37283.1| 837|Homo sapiens protein ( Human DNA seq... 36 0.18
AE006467-10|AAK61284.1| 837|Homo sapiens KIAA0683 protein. 36 0.18
AF298548-1|AAG15254.1| 1429|Homo sapiens caspase recruitment dom... 35 0.31
DQ384431-1|ABD48880.1| 241|Homo sapiens trypsin X3 protein. 33 0.72
DQ384429-1|ABD48879.1| 241|Homo sapiens trypsin X3 protein. 33 0.72
DQ384428-1|ABD48878.1| 241|Homo sapiens trypsin X3 protein. 33 0.72
DQ384427-1|ABD48877.1| 241|Homo sapiens trypsin X3 protein. 33 0.72
DQ384426-1|ABD48876.1| 241|Homo sapiens trypsin X3 protein. 33 0.72
BC035384-1|AAH35384.1| 241|Homo sapiens trypsin X3 protein. 33 0.72
AY358487-1|AAQ88851.1| 241|Homo sapiens KFIL2540 protein. 33 0.72
AF068706-1|AAC67390.1| 751|Homo sapiens gamma2-adaptin protein. 30 6.7
BC112035-1|AAI12036.1| 526|Homo sapiens podocalyxin-like, precu... 30 8.9
BC093730-1|AAH93730.1| 526|Homo sapiens podocalyxin-like protein. 30 8.9
AK223573-1|BAD97293.1| 526|Homo sapiens podocalyxin-like precur... 30 8.9
>AB014583-1|BAA31658.3| 844|Homo sapiens KIAA0683 protein protein.
Length = 844
Score = 35.9 bits (79), Expect = 0.14
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Frame = -1
Query: 639 PWLVTLAVSPLRPLQSLRSGKHVGHTFALVQPCQRNATLGQHDEGAVVEVPQHYKRR--T 466
P V LAV + +L S + GH F ++ +R LG+ + A+ + + +
Sbjct: 12 PSRVRLAVR--EAIHALSSSEDGGHIFCTLESLKRY--LGEMEPPALPREKEEFASAHFS 67
Query: 465 RGRRQVSDIYSPAWLRTERHQRESEKWSA---DGAG*QCF*SLLENTEPSLGCEFR 307
R ++ SPAWL H R E W++ +G Q F L+E E + G FR
Sbjct: 68 PVLRCLASRLSPAWLELLPHGRLEELWASFFLEGPADQAFLVLMETIEGAAGPSFR 123
>BC017188-1|AAH17188.1| 837|Homo sapiens TEL2, telomere maintenance
2, homolog (S. cerevisiae) protein.
Length = 837
Score = 35.5 bits (78), Expect = 0.18
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Frame = -1
Query: 639 PWLVTLAVSPLRPLQSLRSGKHVGHTFALVQPCQRNATLGQHDEGAVVEVPQHYKRR--T 466
P V LAV + +L S + GH F ++ +R LG+ + A+ + + +
Sbjct: 5 PSEVRLAVR--EAIHALSSSEDGGHIFCTLESLKRY--LGEMEPPALPREKEEFASAHFS 60
Query: 465 RGRRQVSDIYSPAWLRTERHQRESEKWSA---DGAG*QCF*SLLENTEPSLGCEFR 307
R ++ SPAWL H R E W++ +G Q F L+E E + G FR
Sbjct: 61 PVLRCLASRLSPAWLELLPHGRLEELWASFFLEGPADQAFLVLMETIEGAAGPSFR 116
>AL031705-4|CAC37283.1| 837|Homo sapiens protein ( Human DNA
sequence from clone LA16c-305C8 on chromosome 16. ).
Length = 837
Score = 35.5 bits (78), Expect = 0.18
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Frame = -1
Query: 639 PWLVTLAVSPLRPLQSLRSGKHVGHTFALVQPCQRNATLGQHDEGAVVEVPQHYKRR--T 466
P V LAV + +L S + GH F ++ +R LG+ + A+ + + +
Sbjct: 5 PSEVRLAVR--EAIHALSSSEDGGHIFCTLESLKRY--LGEMEPPALPREKEEFASAHFS 60
Query: 465 RGRRQVSDIYSPAWLRTERHQRESEKWSA---DGAG*QCF*SLLENTEPSLGCEFR 307
R ++ SPAWL H R E W++ +G Q F L+E E + G FR
Sbjct: 61 PVLRCLASRLSPAWLELLPHGRLEELWASFFLEGPADQAFLVLMETIEGAAGPSFR 116
>AE006467-10|AAK61284.1| 837|Homo sapiens KIAA0683 protein.
Length = 837
Score = 35.5 bits (78), Expect = 0.18
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Frame = -1
Query: 639 PWLVTLAVSPLRPLQSLRSGKHVGHTFALVQPCQRNATLGQHDEGAVVEVPQHYKRR--T 466
P V LAV + +L S + GH F ++ +R LG+ + A+ + + +
Sbjct: 5 PSEVRLAVR--EAIHALSSSEDGGHIFCTLESLKRY--LGEMEPPALPREKEEFASAHFS 60
Query: 465 RGRRQVSDIYSPAWLRTERHQRESEKWSA---DGAG*QCF*SLLENTEPSLGCEFR 307
R ++ SPAWL H R E W++ +G Q F L+E E + G FR
Sbjct: 61 PVLRCLASRLSPAWLELLPHGRLEELWASFFLEGPADQAFLVLMETIEGAAGPSFR 116
>AF298548-1|AAG15254.1| 1429|Homo sapiens caspase recruitment domain
protein 7 protein.
Length = 1429
Score = 34.7 bits (76), Expect = 0.31
Identities = 20/42 (47%), Positives = 23/42 (54%)
Frame = -2
Query: 671 WAAVSAAPQYYHGSSHWPYHHYDPFSPYVRESMLDTHSLWSN 546
WAAV P H SS P+HH P+ P VRES+ T W N
Sbjct: 234 WAAVVGTPPQAH-SSLQPHHH--PWEPSVRESLCSTWP-WKN 271
>DQ384431-1|ABD48880.1| 241|Homo sapiens trypsin X3 protein.
Length = 241
Score = 33.5 bits (73), Expect = 0.72
Identities = 30/114 (26%), Positives = 51/114 (44%)
Frame = -2
Query: 641 YHGSSHWPYHHYDPFSPYVRESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRV 462
Y SS PY Y S Y+ + + H LW A +L + L + P+ NE +
Sbjct: 22 YTVSSTPPYLVYLK-SDYLPCAGVLIHPLWVITAAHC-NLPKLRVILGVTIPADSNEKHL 79
Query: 461 EGDKYQISIHLPGYEQKDINVKAKNGVLMVQANSAFNHYLKIQNLPWDVNSEGS 300
+ Y+ IH P + I+ ++ ++ + N Y+K+ NLP+ SE +
Sbjct: 80 QVIGYEKMIHHPHFSVTSIDHDIM--LIKLKTEAELNDYVKLANLPYQTISENT 131
>DQ384429-1|ABD48879.1| 241|Homo sapiens trypsin X3 protein.
Length = 241
Score = 33.5 bits (73), Expect = 0.72
Identities = 30/114 (26%), Positives = 51/114 (44%)
Frame = -2
Query: 641 YHGSSHWPYHHYDPFSPYVRESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRV 462
Y SS PY Y S Y+ + + H LW A +L + L + P+ NE +
Sbjct: 22 YTVSSTPPYLVYLK-SDYLPCAGVLIHPLWVITAAHC-NLPKLRVILGVTIPADSNEKHL 79
Query: 461 EGDKYQISIHLPGYEQKDINVKAKNGVLMVQANSAFNHYLKIQNLPWDVNSEGS 300
+ Y+ IH P + I+ ++ ++ + N Y+K+ NLP+ SE +
Sbjct: 80 QVIGYEKMIHHPHFSVTSIDHDIM--LIKLKTEAELNDYVKLANLPYQTISENT 131
>DQ384428-1|ABD48878.1| 241|Homo sapiens trypsin X3 protein.
Length = 241
Score = 33.5 bits (73), Expect = 0.72
Identities = 30/114 (26%), Positives = 51/114 (44%)
Frame = -2
Query: 641 YHGSSHWPYHHYDPFSPYVRESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRV 462
Y SS PY Y S Y+ + + H LW A +L + L + P+ NE +
Sbjct: 22 YTVSSTPPYLVYLK-SDYLPCAGVLIHPLWVITAAHC-NLPKLRVILGVTIPADSNEKHL 79
Query: 461 EGDKYQISIHLPGYEQKDINVKAKNGVLMVQANSAFNHYLKIQNLPWDVNSEGS 300
+ Y+ IH P + I+ ++ ++ + N Y+K+ NLP+ SE +
Sbjct: 80 QVIGYEKMIHHPHFSVTSIDHDIM--LIKLKTEAELNDYVKLANLPYQTISENT 131
>DQ384427-1|ABD48877.1| 241|Homo sapiens trypsin X3 protein.
Length = 241
Score = 33.5 bits (73), Expect = 0.72
Identities = 30/114 (26%), Positives = 51/114 (44%)
Frame = -2
Query: 641 YHGSSHWPYHHYDPFSPYVRESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRV 462
Y SS PY Y S Y+ + + H LW A +L + L + P+ NE +
Sbjct: 22 YTVSSTPPYLVYLK-SDYLPCAGVLIHPLWVITAAHC-NLPKLRVILGVTIPADSNEKHL 79
Query: 461 EGDKYQISIHLPGYEQKDINVKAKNGVLMVQANSAFNHYLKIQNLPWDVNSEGS 300
+ Y+ IH P + I+ ++ ++ + N Y+K+ NLP+ SE +
Sbjct: 80 QVIGYEKMIHHPHFSVTSIDHDIM--LIKLKTEAELNDYVKLANLPYQTISENT 131
>DQ384426-1|ABD48876.1| 241|Homo sapiens trypsin X3 protein.
Length = 241
Score = 33.5 bits (73), Expect = 0.72
Identities = 30/114 (26%), Positives = 51/114 (44%)
Frame = -2
Query: 641 YHGSSHWPYHHYDPFSPYVRESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRV 462
Y SS PY Y S Y+ + + H LW A +L + L + P+ NE +
Sbjct: 22 YTVSSTPPYLVYLK-SDYLPCAGVLIHPLWVITAAHC-NLPKLRVILGVTIPADSNEKHL 79
Query: 461 EGDKYQISIHLPGYEQKDINVKAKNGVLMVQANSAFNHYLKIQNLPWDVNSEGS 300
+ Y+ IH P + I+ ++ ++ + N Y+K+ NLP+ SE +
Sbjct: 80 QVIGYEKMIHHPHFSVTSIDHDIM--LIKLKTEAELNDYVKLANLPYQTISENT 131
>BC035384-1|AAH35384.1| 241|Homo sapiens trypsin X3 protein.
Length = 241
Score = 33.5 bits (73), Expect = 0.72
Identities = 30/114 (26%), Positives = 51/114 (44%)
Frame = -2
Query: 641 YHGSSHWPYHHYDPFSPYVRESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRV 462
Y SS PY Y S Y+ + + H LW A +L + L + P+ NE +
Sbjct: 22 YTVSSTPPYLVYLK-SDYLPCAGVLIHPLWVITAAHC-NLPKLRVILGVTIPADSNEKHL 79
Query: 461 EGDKYQISIHLPGYEQKDINVKAKNGVLMVQANSAFNHYLKIQNLPWDVNSEGS 300
+ Y+ IH P + I+ ++ ++ + N Y+K+ NLP+ SE +
Sbjct: 80 QVIGYEKMIHHPHFSVTSIDHDIM--LIKLKTEAELNDYVKLANLPYQTISENT 131
>AY358487-1|AAQ88851.1| 241|Homo sapiens KFIL2540 protein.
Length = 241
Score = 33.5 bits (73), Expect = 0.72
Identities = 30/114 (26%), Positives = 51/114 (44%)
Frame = -2
Query: 641 YHGSSHWPYHHYDPFSPYVRESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRV 462
Y SS PY Y S Y+ + + H LW A +L + L + P+ NE +
Sbjct: 22 YTVSSTPPYLVYLK-SDYLPCAGVLIHPLWVITAAHC-NLPKLRVILGVTIPADSNEKHL 79
Query: 461 EGDKYQISIHLPGYEQKDINVKAKNGVLMVQANSAFNHYLKIQNLPWDVNSEGS 300
+ Y+ IH P + I+ ++ ++ + N Y+K+ NLP+ SE +
Sbjct: 80 QVIGYEKMIHHPHFSVTSIDHDIM--LIKLKTEAELNDYVKLANLPYQTISENT 131
>AF068706-1|AAC67390.1| 751|Homo sapiens gamma2-adaptin protein.
Length = 751
Score = 30.3 bits (65), Expect = 6.7
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -2
Query: 686 CCADCWAAVSAAPQYYHGSSH-WPYHH 609
CCA A +A PQ+ H SS WP +H
Sbjct: 717 CCAQESPAAAAGPQWEHSSSSGWPSYH 743
>BC112035-1|AAI12036.1| 526|Homo sapiens podocalyxin-like,
precursor isoform 2 protein.
Length = 526
Score = 29.9 bits (64), Expect = 8.9
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = -2
Query: 281 VLKITFPLKQKQPEDSKRPVAEPTETTSTNVSREEMEFTTESNVRDVDVGLETA---QKT 111
+L T PL P S P T+TT+ + ++ + + D ++ K
Sbjct: 12 LLLSTPPLLPSSPSPSPSPSQNATQTTTDSSNKTAPTPASSVTIMATDTAQQSTVPTSKA 71
Query: 110 NEIAKAVEATTYAVN 66
NEI +V+ATT V+
Sbjct: 72 NEILASVKATTLGVS 86
>BC093730-1|AAH93730.1| 526|Homo sapiens podocalyxin-like protein.
Length = 526
Score = 29.9 bits (64), Expect = 8.9
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = -2
Query: 281 VLKITFPLKQKQPEDSKRPVAEPTETTSTNVSREEMEFTTESNVRDVDVGLETA---QKT 111
+L T PL P S P T+TT+ + ++ + + D ++ K
Sbjct: 12 LLLSTPPLLPSSPSPSPSPSQNATQTTTDSSNKTAPTPASSVTIMATDTAQQSTVPTSKA 71
Query: 110 NEIAKAVEATTYAVN 66
NEI +V+ATT V+
Sbjct: 72 NEILASVKATTLGVS 86
>AK223573-1|BAD97293.1| 526|Homo sapiens podocalyxin-like precursor
variant protein.
Length = 526
Score = 29.9 bits (64), Expect = 8.9
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = -2
Query: 281 VLKITFPLKQKQPEDSKRPVAEPTETTSTNVSREEMEFTTESNVRDVDVGLETA---QKT 111
+L T PL P S P T+TT+ + ++ + + D ++ K
Sbjct: 12 LLLSTPPLLPSSPSPSPSPSQNATQTTTDSSNKTAPTPASSVTIMATDTAQQSTVPTSKA 71
Query: 110 NEIAKAVEATTYAVN 66
NEI +V+ATT V+
Sbjct: 72 NEILASVKATTLGVS 86
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,972,831
Number of Sequences: 237096
Number of extensions: 2383610
Number of successful extensions: 8526
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 8186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8522
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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