Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte12d20
(611 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0372 + 2668597-2668671,2669021-2669126,2669279-2669334,266... 33 0.18
11_04_0272 - 15631598-15631898,15633162-15633291,15636394-156365... 31 0.54
01_06_0757 + 31737119-31737356,31738683-31738741,31738786-317389... 29 2.9
06_03_1303 + 29180837-29181205,29181289-29181306,29181337-291816... 29 3.8
06_01_0683 - 5006075-5006113,5006303-5006677 29 3.8
09_04_0151 - 15154063-15154296,15155616-15155660,15155749-151558... 28 6.7
04_04_1291 - 32404716-32404946,32405377-32405478,32405731-324059... 28 6.7
03_03_0247 - 15801705-15802478,15802558-15802728,15802886-15803047 28 6.7
01_07_0251 + 42289617-42291241,42291424-42292156 28 6.7
01_01_0320 - 2578911-2579144,2579243-2579455,2579580-2579858,257... 28 6.7
09_02_0255 + 6338611-6338655,6338694-6338909 27 8.9
08_02_0933 + 22740123-22740364,22741952-22742390,22743060-227431... 27 8.9
04_04_1253 + 32097840-32097963,32098154-32098329,32098413-320986... 27 8.9
03_05_1080 + 30229828-30230707,30230861-30231110,30231265-30231499 27 8.9
02_02_0316 - 8878540-8878605,8880040-8880732,8881270-8881758 27 8.9
>02_01_0372 +
2668597-2668671,2669021-2669126,2669279-2669334,
2669830-2669907,2669993-2670066,2670147-2670280,
2670377-2670472,2670703-2670854
Length = 256
Score = 33.1 bits (72), Expect = 0.18
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Frame = -3
Query: 558 LEQKDSLDEHLDVLTRKLADKEGRLRLSKSKIRETQNEXDNLHAIXYDVR--LKYREIME 385
+EQ++ D H RKL + E LR+ K K E Q + ++ + + +K+R+ E
Sbjct: 188 VEQEEKNDMH-----RKLQNTENELRIMKMKQAEQQRDSISVQHVETLKQKVMKFRKENE 242
Query: 384 SLKKDLMYNEKEC 346
SLK+ L +E +C
Sbjct: 243 SLKRRLAISELDC 255
>11_04_0272 -
15631598-15631898,15633162-15633291,15636394-15636544,
15636632-15636730,15636912-15637063,15637079-15637301
Length = 351
Score = 31.5 bits (68), Expect = 0.54
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -1
Query: 557 WSRRTASMSTWMYSPENLLTRKVASAFPSPR 465
WS T +TW E+ L +K+AS FPSPR
Sbjct: 224 WSHYTMDEATW--EKEDDLQKKLASVFPSPR 252
>01_06_0757 +
31737119-31737356,31738683-31738741,31738786-31738940,
31740311-31740386,31740521-31740655,31741273-31741309,
31741817-31741839
Length = 240
Score = 29.1 bits (62), Expect = 2.9
Identities = 26/82 (31%), Positives = 32/82 (39%)
Frame = -2
Query: 349 VQEAAGANRMGVPEAGRVER*GATRSETVRGSGRGTGQ*FI*TAARSRPRLQDNREATRP 170
V+ A A R EA + AT + RG G G G +A R R Q REA +
Sbjct: 21 VRLKARARRWRRREAETLGDADATAAAAARGEGGGGG------SASGRQRRQRKREAEQG 74
Query: 169 ALSHRAASQKGAASTATEPGCV 104
S R G S P C+
Sbjct: 75 GGSERGLGLSGRRSRVDLPACL 96
>06_03_1303 +
29180837-29181205,29181289-29181306,29181337-29181622,
29185008-29186284,29186499-29187005
Length = 818
Score = 28.7 bits (61), Expect = 3.8
Identities = 23/77 (29%), Positives = 38/77 (49%)
Frame = +2
Query: 287 SSFNSARLRDTHSICSCSLLHSFSLYIKSFFSDSMISRYFRRTSXSMAWRLSISFCVSRI 466
++ N A + H+ SL+H L S+ S ++ R RR S SMA ++FC+ ++
Sbjct: 354 AALNDAAILAAHAFSVWSLVHGDWL---SWCSVMLVKR--RRWSASMAQSNLVTFCLRKL 408
Query: 467 LDLERRRRPSLSASFLV 517
LS+SFL+
Sbjct: 409 PSNNDSDPAPLSSSFLL 425
>06_01_0683 - 5006075-5006113,5006303-5006677
Length = 137
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = -2
Query: 223 TAARSRPRLQDNREATRPALSHRAASQKGAASTATEPGCVV 101
T R R L + EA+ PAL A + A+TA EP VV
Sbjct: 19 TNGRRRLHLAAHAEASSPALCRPAHRRLPLAATAAEPATVV 59
>09_04_0151 - 15154063-15154296,15155616-15155660,15155749-15155820,
15155932-15156024,15156282-15156351,15156716-15156912,
15156946-15157215,15158620-15158757,15158841-15158930,
15159041-15159247,15159987-15160154,15160300-15160503,
15160584-15160670,15160748-15160861,15161689-15161835,
15161914-15162063,15162211-15162276,15162376-15162480,
15162625-15162798,15162930-15163154,15163534-15163590,
15163858-15164019,15164234-15164302,15164391-15164471,
15164823-15164925,15165011-15165156,15165285-15165359,
15165441-15165508,15165586-15165667,15165745-15165858,
15166358-15166476,15166692-15166781,15166862-15166988
Length = 1382
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 405 KYREIMESLKKDLMYNEKECKRLQEQIE 322
KY E LKKDL + +E RL+EQ++
Sbjct: 1348 KYLEASTKLKKDLSFYCREVLRLKEQLK 1375
>04_04_1291 -
32404716-32404946,32405377-32405478,32405731-32405910,
32406023-32406100,32407501-32407620,32407713-32407805,
32408369-32408443,32408673-32408828,32408957-32409040,
32409773-32410450,32411814-32411877,32411968-32411978
Length = 623
Score = 27.9 bits (59), Expect = 6.7
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Frame = -3
Query: 534 EHLDVLTRKLADKEGRLRLS-KSKIRETQNEXDNLHAIXYDVRLKYREIMESLKKDLMYN 358
E + RK AD + + K K++E + + LK + LKK+ + +
Sbjct: 306 EAIHAAERKQADADAYMYSEEKRKLKEKYEKELKAPGLGSSCMLKSSNSGKELKKEKLKS 365
Query: 357 EKECKRLQEQIEWVSRRRAELKDE 286
K LQE E R + KDE
Sbjct: 366 AAVIKELQENAEQKLRDELQQKDE 389
>03_03_0247 - 15801705-15802478,15802558-15802728,15802886-15803047
Length = 368
Score = 27.9 bits (59), Expect = 6.7
Identities = 23/63 (36%), Positives = 29/63 (46%)
Frame = -2
Query: 283 ATRSETVRGSGRGTGQ*FI*TAARSRPRLQDNREATRPALSHRAASQKGAASTATEPGCV 104
AT G G G G+ AAR RPR +D L+ A+ +G ASTA CV
Sbjct: 240 ATAVRGAHGGGGGGGRGA--RAARRRPRRED--------LAVTVAAARGRASTAASLACV 289
Query: 103 VGD 95
G+
Sbjct: 290 HGE 292
>01_07_0251 + 42289617-42291241,42291424-42292156
Length = 785
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -3
Query: 177 HVQRSVTELRHRK--EPHLPRPNPAASLVIKTS 85
H+ R+ T LRH H+ R +PAASL ++ +
Sbjct: 16 HLLRACTSLRHAAAVHAHIARAHPAASLFLRNT 48
>01_01_0320 -
2578911-2579144,2579243-2579455,2579580-2579858,
2579961-2580050,2580258-2580439,2581366-2582470
Length = 700
Score = 27.9 bits (59), Expect = 6.7
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Frame = -3
Query: 525 DVLTRKLADKEGRLRLSKS--KIRETQNEX-DNLHAIXYDVRLKYREIMESLKKDLMYNE 355
D+ T+K A + RL + K+ + NE NLH D L+ + E+LK +L
Sbjct: 340 DLETKKNATELSIARLEEDNRKLHDAYNEEMRNLHRRARDYALRVFQDNENLKLELDSRR 399
Query: 354 KECKRLQEQIEWVSRRRA 301
+E +Q+E ++ A
Sbjct: 400 RELNSRAKQLEKITAENA 417
>09_02_0255 + 6338611-6338655,6338694-6338909
Length = 86
Score = 27.5 bits (58), Expect = 8.9
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = -2
Query: 412 APEVP-RDHGVAEEGLDV*REGVQEAAGANRMGVPEAGRVER*GATRSETVRGSGRGTG 239
AP P R G A + EG EA+G+ G EAG + GSGR TG
Sbjct: 11 APPTPIRRRGGASAAVQP--EGSPEASGSAGFGSAEAGDDDDNDEEEEAAAAGSGRATG 67
>08_02_0933 +
22740123-22740364,22741952-22742390,22743060-22743172,
22743470-22743575
Length = 299
Score = 27.5 bits (58), Expect = 8.9
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Frame = +3
Query: 90 FLSPT-TQPGSVAVDAAPFCDAAR*LSAGRVASLLSCNLGRDLAAVQINYWPVPRPLPRT 266
FL+ T T+ GS+ +A C A GR+ + C +G ++ W P+ L
Sbjct: 72 FLARTRTRRGSIQYEAG--CAVA----TGRLWVGVGCEVGLHEGEEELGMWTAPKMLEVA 125
Query: 267 VSDRVAPHLSTRPASGTPIRFAPA 338
PH P P RFAP+
Sbjct: 126 DQALSGPHCQELPDHTCP-RFAPS 148
>04_04_1253 +
32097840-32097963,32098154-32098329,32098413-32098622,
32098720-32098879,32098993-32099212,32099288-32099438
Length = 346
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 71 DVCGGDVFITNDAAGFGRGRCGSFL*RSSVTE 166
DVC ++F+ + + GR CGS ++VTE
Sbjct: 250 DVCRAEIFVAEEESASGRYICGSL--NTTVTE 279
>03_05_1080 + 30229828-30230707,30230861-30231110,30231265-30231499
Length = 454
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -2
Query: 427 HRXRRAPEVPRDHGVAEEGLDV*REGVQEAAGANRMGVPEAG 302
H RR +V GV + D G +E AGA+ GVP+ G
Sbjct: 295 HVRRRDGDVGVGVGVGDVRADAEPGGDEEVAGADPRGVPQEG 336
>02_02_0316 - 8878540-8878605,8880040-8880732,8881270-8881758
Length = 415
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Frame = -3
Query: 201 DYKITEKPHVQRSVTELRHRK----EPHLPRPNPA-ASLVIKTSPP 79
DY I E V RS+ ++RK + PRP+PA A+L++K +PP
Sbjct: 175 DY-IKELQQVLRSLEAKKNRKAYADQVLSPRPSPAAAALMVKPTPP 219
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,445,385
Number of Sequences: 37544
Number of extensions: 352861
Number of successful extensions: 1548
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1548
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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